Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN9P43378 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
PTPN9P43378 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN9P43378 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTPN9P43378 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.22■□□□□ 0.83
PTPN9P43378 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.22■□□□□ 0.83
PTPN9P43378 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN9P43378 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN9P43378 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.21■□□□□ 0.83
PTPN9P43378 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.21■□□□□ 0.83
PTPN9P43378 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
PTPN9P43378 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN9P43378 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.21■□□□□ 0.83
PTPN9P43378 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTPN9P43378 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.21■□□□□ 0.83
PTPN9P43378 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.2■□□□□ 0.82
PTPN9P43378 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.2■□□□□ 0.82
PTPN9P43378 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.2■□□□□ 0.82
PTPN9P43378 AC098590.1-201ENST00000468126 897 ntBASIC20.2■□□□□ 0.82
PTPN9P43378 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.2■□□□□ 0.82
PTPN9P43378 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.2■□□□□ 0.82
PTPN9P43378 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.2■□□□□ 0.82
PTPN9P43378 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.2■□□□□ 0.82
PTPN9P43378 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.2■□□□□ 0.82
PTPN9P43378 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
PTPN9P43378 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.2■□□□□ 0.82
PTPN9P43378 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PTPN9P43378 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PTPN9P43378 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.2■□□□□ 0.82
PTPN9P43378 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.2■□□□□ 0.82
PTPN9P43378 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTPN9P43378 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.2■□□□□ 0.82
PTPN9P43378 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.19■□□□□ 0.82
PTPN9P43378 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.19■□□□□ 0.82
PTPN9P43378 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
PTPN9P43378 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
PTPN9P43378 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PTPN9P43378 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.19■□□□□ 0.82
PTPN9P43378 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
PTPN9P43378 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.19■□□□□ 0.82
PTPN9P43378 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.19■□□□□ 0.82
PTPN9P43378 AL353708.3-201ENST00000610272 989 ntBASIC20.19■□□□□ 0.82
PTPN9P43378 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.19■□□□□ 0.82
PTPN9P43378 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.19■□□□□ 0.82
PTPN9P43378 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PTPN9P43378 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.19■□□□□ 0.82
PTPN9P43378 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
PTPN9P43378 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTPN9P43378 SDHAP1-207ENST00000440850 2000 ntBASIC20.19■□□□□ 0.82
PTPN9P43378 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PTPN9P43378 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PTPN9P43378 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.18■□□□□ 0.82
PTPN9P43378 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.18■□□□□ 0.82
PTPN9P43378 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.18■□□□□ 0.82
PTPN9P43378 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.18■□□□□ 0.82
PTPN9P43378 GCSHP5-201ENST00000443090 522 ntBASIC20.18■□□□□ 0.82
PTPN9P43378 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.18■□□□□ 0.82
PTPN9P43378 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.18■□□□□ 0.82
PTPN9P43378 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.18■□□□□ 0.82
PTPN9P43378 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.18■□□□□ 0.82
PTPN9P43378 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PTPN9P43378 FAM197Y4-202ENST00000622692 608 ntBASIC20.18■□□□□ 0.82
PTPN9P43378 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.18■□□□□ 0.82
PTPN9P43378 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.18■□□□□ 0.82
PTPN9P43378 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.18■□□□□ 0.82
PTPN9P43378 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.18■□□□□ 0.82
PTPN9P43378 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTPN9P43378 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.17■□□□□ 0.82
PTPN9P43378 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN9P43378 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PTPN9P43378 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
PTPN9P43378 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN9P43378 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PTPN9P43378 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms