Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
USF1P22415 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 CYP2D8P-201ENST00000433633 1490 ntBASIC16.44■□□□□ 0.22
USF1P22415 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.44■□□□□ 0.22
USF1P22415 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 C1QL1P1-201ENST00000568105 661 ntBASIC16.44■□□□□ 0.22
USF1P22415 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
USF1P22415 AC010947.1-201ENST00000623454 693 ntBASIC16.44■□□□□ 0.22
USF1P22415 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC16.44■□□□□ 0.22
USF1P22415 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
USF1P22415 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
USF1P22415 KRT16P6-202ENST00000425692 1426 ntBASIC16.44■□□□□ 0.22
USF1P22415 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
USF1P22415 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
USF1P22415 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
USF1P22415 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
USF1P22415 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
USF1P22415 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.43■□□□□ 0.22
USF1P22415 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
USF1P22415 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
USF1P22415 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.43■□□□□ 0.22
USF1P22415 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.43■□□□□ 0.22
USF1P22415 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 KRT18P57-201ENST00000443599 1254 ntBASIC16.43■□□□□ 0.22
USF1P22415 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.43■□□□□ 0.22
USF1P22415 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 AC026271.3-201ENST00000571884 352 ntBASIC16.43■□□□□ 0.22
USF1P22415 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.43■□□□□ 0.22
USF1P22415 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.43■□□□□ 0.22
USF1P22415 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
USF1P22415 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.43■□□□□ 0.22
USF1P22415 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.43■□□□□ 0.22
USF1P22415 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
USF1P22415 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
USF1P22415 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
USF1P22415 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 TERF1P1-201ENST00000311003 1181 ntBASIC16.42■□□□□ 0.22
USF1P22415 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.42■□□□□ 0.22
USF1P22415 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.42■□□□□ 0.22
USF1P22415 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.42■□□□□ 0.22
USF1P22415 C2orf69P3-201ENST00000565542 1120 ntBASIC16.42■□□□□ 0.22
USF1P22415 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.42■□□□□ 0.22
USF1P22415 AL445675.2-201ENST00000620291 557 ntBASIC16.42■□□□□ 0.22
USF1P22415 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 AC092720.2-201ENST00000602388 1665 ntBASIC16.42■□□□□ 0.22
USF1P22415 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
USF1P22415 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.42■□□□□ 0.22
USF1P22415 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
USF1P22415 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.42■□□□□ 0.22
USF1P22415 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
USF1P22415 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
USF1P22415 AIRN-201ENST00000601203 4374 ntBASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms