Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.03■□□□□ 0.8
COL9A1P20849 MIR3180-1-201ENST00000580374 94 ntBASIC20.03■□□□□ 0.8
COL9A1P20849 MIR3180-3-201ENST00000584616 94 ntBASIC20.03■□□□□ 0.8
COL9A1P20849 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.03■□□□□ 0.8
COL9A1P20849 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.03■□□□□ 0.8
COL9A1P20849 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.03■□□□□ 0.8
COL9A1P20849 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.03■□□□□ 0.8
COL9A1P20849 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 PMS2P7-201ENST00000506558 1336 ntBASIC20.02■□□□□ 0.8
COL9A1P20849 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
COL9A1P20849 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.02■□□□□ 0.8
COL9A1P20849 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
COL9A1P20849 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.02■□□□□ 0.8
COL9A1P20849 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
COL9A1P20849 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.02■□□□□ 0.8
COL9A1P20849 SLC25A1P2-201ENST00000430693 912 ntBASIC20.02■□□□□ 0.8
COL9A1P20849 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL9A1P20849 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL9A1P20849 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.02■□□□□ 0.8
COL9A1P20849 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL9A1P20849 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.02■□□□□ 0.79
COL9A1P20849 IL9RP2-201ENST00000423948 1312 ntBASIC20.02■□□□□ 0.79
COL9A1P20849 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
COL9A1P20849 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
COL9A1P20849 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL9A1P20849 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL9A1P20849 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.01■□□□□ 0.79
COL9A1P20849 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
COL9A1P20849 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL9A1P20849 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.01■□□□□ 0.79
COL9A1P20849 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL9A1P20849 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL9A1P20849 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.01■□□□□ 0.79
COL9A1P20849 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.01■□□□□ 0.79
COL9A1P20849 TSSC2-201ENST00000450217 709 ntBASIC20.01■□□□□ 0.79
COL9A1P20849 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.01■□□□□ 0.79
COL9A1P20849 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.01■□□□□ 0.79
COL9A1P20849 HYMAI.1-201ENST00000620949 238 ntBASIC20.01■□□□□ 0.79
COL9A1P20849 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
COL9A1P20849 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL9A1P20849 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.01■□□□□ 0.79
COL9A1P20849 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL9A1P20849 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.01■□□□□ 0.79
COL9A1P20849 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.01■□□□□ 0.79
COL9A1P20849 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL9A1P20849 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
COL9A1P20849 AC006128.1-201ENST00000624704 1661 ntBASIC20■□□□□ 0.79
COL9A1P20849 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL9A1P20849 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL9A1P20849 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20■□□□□ 0.79
COL9A1P20849 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
COL9A1P20849 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
COL9A1P20849 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL9A1P20849 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20■□□□□ 0.79
COL9A1P20849 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20■□□□□ 0.79
COL9A1P20849 AL121772.3-201ENST00000610840 674 ntBASIC20■□□□□ 0.79
COL9A1P20849 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
COL9A1P20849 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20■□□□□ 0.79
COL9A1P20849 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL9A1P20849 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL9A1P20849 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL9A1P20849 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
COL9A1P20849 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL9A1P20849 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL9A1P20849 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.99■□□□□ 0.79
COL9A1P20849 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
COL9A1P20849 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.99■□□□□ 0.79
COL9A1P20849 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
COL9A1P20849 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC19.99■□□□□ 0.79
COL9A1P20849 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL9A1P20849 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.99■□□□□ 0.79
COL9A1P20849 SLC25A1P1-201ENST00000528351 927 ntBASIC19.99■□□□□ 0.79
COL9A1P20849 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
COL9A1P20849 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
COL9A1P20849 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL9A1P20849 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.99■□□□□ 0.79
COL9A1P20849 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL9A1P20849 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL9A1P20849 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
COL9A1P20849 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL9A1P20849 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.98■□□□□ 0.79
COL9A1P20849 TSPY12P-201ENST00000421279 868 ntBASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms