Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A2P12110 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A2P12110 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A2P12110 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL6A2P12110 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A2P12110 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.18■□□□□ 0.66
COL6A2P12110 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.18■□□□□ 0.66
COL6A2P12110 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.18■□□□□ 0.66
COL6A2P12110 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.18■□□□□ 0.66
COL6A2P12110 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
COL6A2P12110 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A2P12110 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
COL6A2P12110 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A2P12110 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A2P12110 MIPEPP3-201ENST00000412105 444 ntBASIC19.17■□□□□ 0.66
COL6A2P12110 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.17■□□□□ 0.66
COL6A2P12110 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A2P12110 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A2P12110 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A2P12110 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
COL6A2P12110 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A2P12110 AC092118.2-201ENST00000613495 667 ntBASIC19.17■□□□□ 0.66
COL6A2P12110 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A2P12110 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A2P12110 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A2P12110 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL6A2P12110 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A2P12110 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A2P12110 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 RPS2P52-201ENST00000469610 820 ntBASIC19.16■□□□□ 0.66
COL6A2P12110 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A2P12110 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
COL6A2P12110 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A2P12110 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.16■□□□□ 0.66
COL6A2P12110 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL6A2P12110 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A2P12110 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A2P12110 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A2P12110 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A2P12110 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A2P12110 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A2P12110 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
COL6A2P12110 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
COL6A2P12110 AC006333.2-201ENST00000607957 2099 ntBASIC19.15■□□□□ 0.66
COL6A2P12110 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.15■□□□□ 0.66
COL6A2P12110 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL6A2P12110 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms