Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.5■□□□□ 0.71
VIMP08670 NOC2LP2-201ENST00000407594 1944 ntBASIC19.5■□□□□ 0.71
VIMP08670 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
VIMP08670 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.5■□□□□ 0.71
VIMP08670 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VIMP08670 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.5■□□□□ 0.71
VIMP08670 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VIMP08670 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 NOC2LP1-202ENST00000452600 2235 ntBASIC19.49■□□□□ 0.71
VIMP08670 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
VIMP08670 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.49■□□□□ 0.71
VIMP08670 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
VIMP08670 UNC93B3-201ENST00000308076 687 ntBASIC19.49■□□□□ 0.71
VIMP08670 AC099791.1-201ENST00000416440 715 ntBASIC19.49■□□□□ 0.71
VIMP08670 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.49■□□□□ 0.71
VIMP08670 AC010141.2-201ENST00000452426 721 ntBASIC19.49■□□□□ 0.71
VIMP08670 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.49■□□□□ 0.71
VIMP08670 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 AL358852.1-201ENST00000623174 1268 ntBASIC19.49■□□□□ 0.71
VIMP08670 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 BICD1-207ENST00000551848 1962 ntBASIC19.49■□□□□ 0.71
VIMP08670 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
VIMP08670 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
VIMP08670 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
VIMP08670 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 KRT8P17-201ENST00000453110 1448 ntBASIC19.49■□□□□ 0.71
VIMP08670 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VIMP08670 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.48■□□□□ 0.71
VIMP08670 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VIMP08670 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VIMP08670 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
VIMP08670 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VIMP08670 AL354751.1-201ENST00000412768 1863 ntBASIC19.48■□□□□ 0.71
VIMP08670 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.48■□□□□ 0.71
VIMP08670 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
VIMP08670 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.48■□□□□ 0.71
VIMP08670 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.48■□□□□ 0.71
VIMP08670 AC068880.1-201ENST00000507289 2297 ntBASIC19.48■□□□□ 0.71
VIMP08670 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VIMP08670 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.48■□□□□ 0.71
VIMP08670 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VIMP08670 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.48■□□□□ 0.71
VIMP08670 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.48■□□□□ 0.71
VIMP08670 AC105265.2-201ENST00000467189 838 ntBASIC19.48■□□□□ 0.71
VIMP08670 AL356652.1-201ENST00000615962 565 ntBASIC19.48■□□□□ 0.71
VIMP08670 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
VIMP08670 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.48■□□□□ 0.71
VIMP08670 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.48■□□□□ 0.71
VIMP08670 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
VIMP08670 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.48■□□□□ 0.71
VIMP08670 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.48■□□□□ 0.71
VIMP08670 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
VIMP08670 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
VIMP08670 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VIMP08670 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VIMP08670 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
VIMP08670 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VIMP08670 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 PGM5P4-201ENST00000421970 445 ntBASIC19.47■□□□□ 0.71
VIMP08670 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.47■□□□□ 0.71
VIMP08670 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.47■□□□□ 0.71
VIMP08670 TPRG1LP1-201ENST00000598702 760 ntBASIC19.47■□□□□ 0.71
VIMP08670 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.47■□□□□ 0.71
VIMP08670 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VIMP08670 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VIMP08670 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VIMP08670 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VIMP08670 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.47■□□□□ 0.71
VIMP08670 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.47■□□□□ 0.71
VIMP08670 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VIMP08670 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.46■□□□□ 0.71
VIMP08670 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.46■□□□□ 0.71
VIMP08670 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
VIMP08670 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VIMP08670 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VIMP08670 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms