Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
CACNA1FO60840 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CACNA1FO60840 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC24.55■■□□□ 1.52
CACNA1FO60840 AC011298.2-201ENST00000617989 482 ntBASIC24.55■■□□□ 1.52
CACNA1FO60840 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC24.55■■□□□ 1.52
CACNA1FO60840 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC24.55■■□□□ 1.52
CACNA1FO60840 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
CACNA1FO60840 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CACNA1FO60840 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CACNA1FO60840 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC24.55■■□□□ 1.52
CACNA1FO60840 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CACNA1FO60840 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
CACNA1FO60840 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1FO60840 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1FO60840 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
CACNA1FO60840 PPOX-219ENST00000544598 813 ntTSL 2 BASIC24.54■■□□□ 1.52
CACNA1FO60840 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC24.54■■□□□ 1.52
CACNA1FO60840 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC24.54■■□□□ 1.52
CACNA1FO60840 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC24.54■■□□□ 1.52
CACNA1FO60840 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1FO60840 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
CACNA1FO60840 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1FO60840 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1FO60840 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1FO60840 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1FO60840 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC24.54■■□□□ 1.52
CACNA1FO60840 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CACNA1FO60840 TSPY23P-201ENST00000440136 739 ntBASIC24.54■■□□□ 1.52
CACNA1FO60840 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC24.54■■□□□ 1.52
CACNA1FO60840 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC24.54■■□□□ 1.52
CACNA1FO60840 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC24.53■■□□□ 1.52
CACNA1FO60840 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC24.53■■□□□ 1.52
CACNA1FO60840 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC24.53■■□□□ 1.52
CACNA1FO60840 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC24.53■■□□□ 1.52
CACNA1FO60840 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 TEX21P-204ENST00000641479 1693 ntBASIC24.53■■□□□ 1.52
CACNA1FO60840 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC24.53■■□□□ 1.52
CACNA1FO60840 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC24.53■■□□□ 1.52
CACNA1FO60840 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 TSPY15P-201ENST00000457163 923 ntBASIC24.53■■□□□ 1.52
CACNA1FO60840 CA15P1-201ENST00000481698 905 ntBASIC24.53■■□□□ 1.52
CACNA1FO60840 DUT-205ENST00000558813 769 ntTSL 2 BASIC24.53■■□□□ 1.52
CACNA1FO60840 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC24.53■■□□□ 1.52
CACNA1FO60840 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CACNA1FO60840 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CACNA1FO60840 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC24.52■■□□□ 1.52
CACNA1FO60840 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC24.52■■□□□ 1.52
CACNA1FO60840 FDX2-206ENST00000492239 773 ntTSL 2 BASIC24.52■■□□□ 1.52
CACNA1FO60840 FITM1-202ENST00000559294 800 ntBASIC24.52■■□□□ 1.52
CACNA1FO60840 AP005242.2-201ENST00000580065 1175 ntBASIC24.52■■□□□ 1.52
CACNA1FO60840 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC24.52■■□□□ 1.52
CACNA1FO60840 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC24.52■■□□□ 1.52
CACNA1FO60840 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CACNA1FO60840 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
CACNA1FO60840 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CACNA1FO60840 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC24.51■■□□□ 1.51
CACNA1FO60840 KRT8P11-201ENST00000409686 1436 ntBASIC24.51■■□□□ 1.51
CACNA1FO60840 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1FO60840 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC24.51■■□□□ 1.51
CACNA1FO60840 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1FO60840 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC24.51■■□□□ 1.51
CACNA1FO60840 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
CACNA1FO60840 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC24.51■■□□□ 1.51
CACNA1FO60840 AP000692.2-201ENST00000608391 879 ntBASIC24.51■■□□□ 1.51
CACNA1FO60840 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1FO60840 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC24.51■■□□□ 1.51
CACNA1FO60840 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1FO60840 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC24.51■■□□□ 1.51
CACNA1FO60840 GAS2L1P1-201ENST00000420145 1480 ntBASIC24.51■■□□□ 1.51
CACNA1FO60840 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1FO60840 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
CACNA1FO60840 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC24.51■■□□□ 1.51
CACNA1FO60840 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1FO60840 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
CACNA1FO60840 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CACNA1FO60840 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CACNA1FO60840 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CACNA1FO60840 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.5■■□□□ 1.51
CACNA1FO60840 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC24.5■■□□□ 1.51
CACNA1FO60840 AFG3L1P-217ENST00000557444 2447 ntBASIC24.5■■□□□ 1.51
CACNA1FO60840 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC24.5■■□□□ 1.51
CACNA1FO60840 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CACNA1FO60840 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CACNA1FO60840 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC24.5■■□□□ 1.51
CACNA1FO60840 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC24.5■■□□□ 1.51
CACNA1FO60840 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC24.5■■□□□ 1.51
CACNA1FO60840 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
CACNA1FO60840 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC24.5■■□□□ 1.51
CACNA1FO60840 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CACNA1FO60840 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.49■■□□□ 1.51
CACNA1FO60840 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CACNA1FO60840 MFAP1P1-201ENST00000442257 1255 ntBASIC24.49■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms