Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PHGDHO43175 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
PHGDHO43175 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PHGDHO43175 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
PHGDHO43175 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PHGDHO43175 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PHGDHO43175 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.31■□□□□ 0.68
PHGDHO43175 NCF1B-203ENST00000435988 1254 ntBASIC19.31■□□□□ 0.68
PHGDHO43175 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PHGDHO43175 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PHGDHO43175 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
PHGDHO43175 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PHGDHO43175 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.31■□□□□ 0.68
PHGDHO43175 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PHGDHO43175 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
PHGDHO43175 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.3■□□□□ 0.68
PHGDHO43175 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
PHGDHO43175 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.3■□□□□ 0.68
PHGDHO43175 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.3■□□□□ 0.68
PHGDHO43175 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.3■□□□□ 0.68
PHGDHO43175 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PHGDHO43175 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.3■□□□□ 0.68
PHGDHO43175 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.3■□□□□ 0.68
PHGDHO43175 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.3■□□□□ 0.68
PHGDHO43175 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 TEX21P-204ENST00000641479 1693 ntBASIC19.3■□□□□ 0.68
PHGDHO43175 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PHGDHO43175 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.29■□□□□ 0.68
PHGDHO43175 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
PHGDHO43175 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.29■□□□□ 0.68
PHGDHO43175 AL049812.1-201ENST00000432563 2267 ntBASIC19.29■□□□□ 0.68
PHGDHO43175 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.29■□□□□ 0.68
PHGDHO43175 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.29■□□□□ 0.68
PHGDHO43175 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
PHGDHO43175 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.29■□□□□ 0.68
PHGDHO43175 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.29■□□□□ 0.68
PHGDHO43175 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.29■□□□□ 0.68
PHGDHO43175 AC098934.4-201ENST00000564127 592 ntBASIC19.29■□□□□ 0.68
PHGDHO43175 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.29■□□□□ 0.68
PHGDHO43175 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.29■□□□□ 0.68
PHGDHO43175 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
PHGDHO43175 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PHGDHO43175 AL161938.1-201ENST00000569833 2180 ntBASIC19.29■□□□□ 0.68
PHGDHO43175 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.29■□□□□ 0.68
PHGDHO43175 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PHGDHO43175 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.28■□□□□ 0.68
PHGDHO43175 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 ZNF815P-204ENST00000434898 1737 ntBASIC19.28■□□□□ 0.68
PHGDHO43175 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 AC092368.3-202ENST00000574180 1591 ntBASIC19.28■□□□□ 0.68
PHGDHO43175 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PHGDHO43175 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.28■□□□□ 0.68
PHGDHO43175 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.28■□□□□ 0.68
PHGDHO43175 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PHGDHO43175 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.28■□□□□ 0.68
PHGDHO43175 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.28■□□□□ 0.68
PHGDHO43175 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.28■□□□□ 0.68
PHGDHO43175 MYC-209ENST00000641252 345 ntBASIC19.28■□□□□ 0.68
PHGDHO43175 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PHGDHO43175 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PHGDHO43175 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
PHGDHO43175 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PHGDHO43175 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PHGDHO43175 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.27■□□□□ 0.68
PHGDHO43175 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
PHGDHO43175 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PHGDHO43175 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PHGDHO43175 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PHGDHO43175 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.27■□□□□ 0.68
PHGDHO43175 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.27■□□□□ 0.68
PHGDHO43175 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
PHGDHO43175 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PHGDHO43175 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PHGDHO43175 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.27■□□□□ 0.68
PHGDHO43175 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PHGDHO43175 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms