Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
MSH4O15457 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH4O15457 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.87■■□□□ 1.09
MSH4O15457 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.87■■□□□ 1.09
MSH4O15457 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.87■■□□□ 1.09
MSH4O15457 AC104417.2-201ENST00000562989 1793 ntBASIC21.87■■□□□ 1.09
MSH4O15457 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH4O15457 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH4O15457 ZNF815P-204ENST00000434898 1737 ntBASIC21.86■■□□□ 1.09
MSH4O15457 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
MSH4O15457 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH4O15457 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
MSH4O15457 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH4O15457 B3GAT3P1-201ENST00000471720 806 ntBASIC21.86■■□□□ 1.09
MSH4O15457 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
MSH4O15457 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.86■■□□□ 1.09
MSH4O15457 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH4O15457 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
MSH4O15457 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH4O15457 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH4O15457 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.86■■□□□ 1.09
MSH4O15457 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH4O15457 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH4O15457 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH4O15457 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH4O15457 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH4O15457 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH4O15457 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH4O15457 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH4O15457 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH4O15457 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH4O15457 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH4O15457 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH4O15457 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH4O15457 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH4O15457 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH4O15457 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH4O15457 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH4O15457 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH4O15457 AC008040.2-201ENST00000461049 708 ntBASIC21.85■■□□□ 1.09
MSH4O15457 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH4O15457 MIR6786-201ENST00000616843 113 ntBASIC21.85■■□□□ 1.09
MSH4O15457 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH4O15457 RCC2P6-201ENST00000526625 1557 ntBASIC21.85■■□□□ 1.09
MSH4O15457 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.85■■□□□ 1.09
MSH4O15457 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.85■■□□□ 1.09
MSH4O15457 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH4O15457 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH4O15457 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
MSH4O15457 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
MSH4O15457 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.84■■□□□ 1.09
MSH4O15457 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC21.84■■□□□ 1.09
MSH4O15457 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH4O15457 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.84■■□□□ 1.09
MSH4O15457 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.84■■□□□ 1.09
MSH4O15457 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.84■■□□□ 1.09
MSH4O15457 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH4O15457 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSH4O15457 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
MSH4O15457 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.83■■□□□ 1.09
MSH4O15457 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
MSH4O15457 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
MSH4O15457 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH4O15457 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSH4O15457 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSH4O15457 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH4O15457 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH4O15457 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH4O15457 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH4O15457 RBM17P1-201ENST00000453646 1190 ntBASIC21.83■■□□□ 1.09
MSH4O15457 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.83■■□□□ 1.09
MSH4O15457 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH4O15457 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.83■■□□□ 1.09
MSH4O15457 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH4O15457 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.83■■□□□ 1.08
MSH4O15457 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSH4O15457 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSH4O15457 FSCN1P1-201ENST00000568912 1481 ntBASIC21.83■■□□□ 1.08
MSH4O15457 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.83■■□□□ 1.08
MSH4O15457 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
MSH4O15457 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
MSH4O15457 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH4O15457 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
MSH4O15457 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.82■■□□□ 1.08
MSH4O15457 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH4O15457 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms