Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 REXO1L10P-201ENST00000615707 1290 ntBASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NPIPA2E9PIF3 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 TFP1-202ENST00000475455 1573 ntBASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 AL691432.2-201ENST00000607222 2038 ntBASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 UNC93B2-201ENST00000285383 730 ntBASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 RBM17P1-201ENST00000453646 1190 ntBASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 PHGDH-210ENST00000641115 1638 ntBASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 KRT16P1-201ENST00000399124 1418 ntBASIC17.71■□□□□ 0.43
NPIPA2E9PIF3 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
NPIPA2E9PIF3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
NPIPA2E9PIF3 HCG11-201ENST00000411553 5696 ntBASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
NPIPA2E9PIF3 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 MIR1224-201ENST00000408193 85 ntBASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 AP000525.1-201ENST00000608286 694 ntBASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 AC097493.4-201ENST00000641197 219 ntBASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
NPIPA2E9PIF3 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NPIPA2E9PIF3 MIR1238-201ENST00000408483 83 ntBASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms