Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A6A6NMZ7 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 AC092597.1-201ENST00000487352 616 ntBASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 RNA5SP419-201ENST00000515908 135 ntBASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 AL121912.1-201ENST00000603683 238 ntBASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 AL355385.1-201ENST00000606123 409 ntBASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 AC242852.2-201ENST00000615738 1807 ntBASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 AC005229.4-201ENST00000610085 2198 ntBASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 KRT16P4-201ENST00000453883 522 ntBASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.52■□□□□ 0.4
COL6A6A6NMZ7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A6A6NMZ7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A6A6NMZ7 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.52■□□□□ 0.39
COL6A6A6NMZ7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A6A6NMZ7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 TPSP2-201ENST00000561760 610 ntBASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A6A6NMZ7 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 TSSC2-201ENST00000450217 709 ntBASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 AL590627.1-203ENST00000421194 1026 ntBASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 HLA-F-220ENST00000434407 884 ntBASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 AP002414.4-201ENST00000589764 1148 ntBASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A6A6NMZ7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms