Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 HMGB3P16-201ENST00000508037 287 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 IGKV2D-19-201ENST00000523346 262 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AC097461.1-201ENST00000568928 2821 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AC004944.1-201ENST00000517807 3059 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 DNM1P47-203ENST00000571780 12667 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 ERCC6-202ENST00000374127 1782 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AL590704.1-201ENST00000402856 794 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 HMGN2P31-201ENST00000432430 273 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AL133244.1-201ENST00000456007 258 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 RPL38P1-201ENST00000460914 211 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 RPS26P28-201ENST00000470806 348 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 AC006064.5-201ENST00000541782 248 ntBASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SHANK3Q9BYB0 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 BCORP1-203ENST00000513194 5093 ntBASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 ACEA_U3.1-201ENST00000363057 217 ntBASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 RPS29P19-201ENST00000479709 171 ntBASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 AL359219.2-201ENST00000555184 348 ntBASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 AC023632.6-201ENST00000624338 2177 ntBASIC5.42□□□□□ -1.54
SHANK3Q9BYB0 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 AC083837.1-201ENST00000565297 2994 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 AC006042.3-201ENST00000454684 1469 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 RNA5SP72-201ENST00000364442 117 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 RNU1-44P-201ENST00000384453 163 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 NPM1P37-201ENST00000403105 874 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 OR2AH1P-201ENST00000425717 928 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 GTF3AP5-201ENST00000442645 697 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 SNRPCP3-201ENST00000474888 476 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 RPS4XP15-201ENST00000489210 795 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 AC009229.4-201ENST00000623854 1947 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 NCOA4P2-201ENST00000340589 1813 ntBASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC5.41□□□□□ -1.54
SHANK3Q9BYB0 FAM91A3P-201ENST00000456826 2544 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 ATP5F1P4-201ENST00000397288 746 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 RN7SKP156-201ENST00000410308 342 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 OR4F13P-201ENST00000428478 931 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 PRDX3P3-201ENST00000447765 522 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 RPS27AP1-201ENST00000475545 471 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AC110792.1-201ENST00000491826 472 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AP005205.1-201ENST00000563503 508 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 HMGB2P1-201ENST00000591146 634 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 AL592436.1-201ENST00000605135 558 ntBASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC5.4□□□□□ -1.54
SHANK3Q9BYB0 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms