Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 RNU1-74P-201ENST00000384108 171 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 RNU6-413P-201ENST00000384115 107 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AL049545.1-201ENST00000401856 572 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 DUTP5-201ENST00000406790 469 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 U3.32-201ENST00000408116 212 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 COX5BP7-201ENST00000414780 274 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC027644.1-201ENST00000419595 298 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 GAPDHP49-201ENST00000421421 961 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AL355433.1-201ENST00000422804 300 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC5.73□□□□□ -1.49
HPS3Q969F9 RPS29P10-201ENST00000439197 166 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 RPS7P5-201ENST00000441482 581 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 TPTE2P6-202ENST00000445572 1007 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.73□□□□□ -1.49
HPS3Q969F9 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 Z92846.1-201ENST00000456203 268 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 MYL12BP2-201ENST00000503948 512 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC092593.2-201ENST00000513866 913 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC119751.5-201ENST00000514077 770 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC012400.1-201ENST00000518452 381 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 HMGB1P23-201ENST00000518743 568 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 IGJP1-201ENST00000522682 475 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AP001636.2-201ENST00000525517 696 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.73□□□□□ -1.49
HPS3Q969F9 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC5.73□□□□□ -1.49
HPS3Q969F9 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.73□□□□□ -1.49
HPS3Q969F9 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC044913.1-201ENST00000557200 430 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC040958.1-201ENST00000561102 201 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC069366.1-201ENST00000583159 838 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC010503.3-201ENST00000594355 540 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 VN1R78P-201ENST00000597393 564 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AP000238.1-201ENST00000608759 426 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC024257.5-201ENST00000612739 531 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC108359.1-201ENST00000616451 1211 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC091304.6-201ENST00000619761 202 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 MIR6837-201ENST00000620884 64 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.73□□□□□ -1.49
HPS3Q969F9 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.73□□□□□ -1.49
HPS3Q969F9 AC087821.2-201ENST00000637086 450 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 AC074101.1-201ENST00000637861 241 ntBASIC5.73□□□□□ -1.49
HPS3Q969F9 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
HPS3Q969F9 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.73□□□□□ -1.49
HPS3Q969F9 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HPS3Q969F9 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HPS3Q969F9 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.72□□□□□ -1.49
HPS3Q969F9 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HPS3Q969F9 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HPS3Q969F9 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.72□□□□□ -1.49
HPS3Q969F9 AC083843.2-201ENST00000568248 6253 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HPS3Q969F9 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.72□□□□□ -1.49
HPS3Q969F9 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.72□□□□□ -1.49
HPS3Q969F9 TRIM51GP-201ENST00000534741 1350 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HPS3Q969F9 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.72□□□□□ -1.49
HPS3Q969F9 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
HPS3Q969F9 OR9K1P-201ENST00000326513 941 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
HPS3Q969F9 AP000534.2-201ENST00000412729 568 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 AC114814.2-201ENST00000419195 485 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.72□□□□□ -1.49
HPS3Q969F9 NANOGP4-201ENST00000427230 913 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 CNOT7P1-201ENST00000429006 852 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 RPS6P15-201ENST00000431996 751 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 RPL21P110-201ENST00000433345 446 ntBASIC5.72□□□□□ -1.49
HPS3Q969F9 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC5.72□□□□□ -1.49
HPS3Q969F9 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC5.72□□□□□ -1.49
HPS3Q969F9 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.72□□□□□ -1.49
HPS3Q969F9 AC007327.1-201ENST00000447461 264 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms