Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 SRRM1P3-201ENST00000426911 2678 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 Y_RNA.126-201ENST00000363382 111 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 RN7SKP6-201ENST00000364795 319 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 RN7SKP153-201ENST00000365026 316 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 RNU6-207P-201ENST00000384137 107 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 RNU1-77P-201ENST00000390868 162 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 HMGB3P19-201ENST00000403971 560 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 RPL12P9-201ENST00000412942 488 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC009965.2-201ENST00000425328 970 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 OR6D1P-201ENST00000436165 939 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 GEMIN8P3-201ENST00000445417 720 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 RPL31P44-201ENST00000447680 377 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC239809.1-201ENST00000450470 217 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 RPS3AP53-201ENST00000454716 778 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC005229.2-201ENST00000456995 399 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC092324.1-201ENST00000468671 324 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC022133.1-201ENST00000490961 571 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC069304.1-201ENST00000491593 704 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC023424.1-201ENST00000496058 459 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC109464.1-201ENST00000511091 819 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC110775.1-201ENST00000513721 462 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 OR5AK3P-201ENST00000527486 1297 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC136624.4-201ENST00000573044 370 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 MIR4716-201ENST00000579628 84 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC099785.1-201ENST00000605697 437 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC017076.1-201ENST00000607613 578 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 AL645568.2-201ENST00000432815 1337 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 MTCO1P18-201ENST00000455518 1419 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
PDLIM3Q53GG5 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.72
PDLIM3Q53GG5 AC073136.1-201ENST00000449426 2884 ntBASIC4.34□□□□□ -1.72
PDLIM3Q53GG5 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
PDLIM3Q53GG5 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
PDLIM3Q53GG5 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.34□□□□□ -1.72
PDLIM3Q53GG5 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
PDLIM3Q53GG5 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 AC091046.3-201ENST00000631455 1574 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 RPL32P3-201ENST00000359025 275 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 RNU5B-4P-201ENST00000363508 111 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 RNA5SP27-201ENST00000363839 119 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 U6.112-201ENST00000384129 70 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 RNU4-31P-201ENST00000384211 141 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 AL590139.1-201ENST00000416267 400 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 AC241520.1-201ENST00000422654 1099 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 DNAJC19P7-201ENST00000428811 344 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 RBMY2QP-201ENST00000429799 1147 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 AC092447.2-201ENST00000435487 669 ntBASIC4.33□□□□□ -1.72
PDLIM3Q53GG5 AC011753.3-201ENST00000443436 406 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms