Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.09□□□□□ -1.6
PTPN9P43378 Z95331.1-201ENST00000623075 23112 ntBASIC5.09□□□□□ -1.6
PTPN9P43378 CCT8P1-201ENST00000413611 1657 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 DHX9P1-201ENST00000436565 3076 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 VN2R3P-201ENST00000422626 1412 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 RBPJP2-201ENST00000618187 1444 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.08□□□□□ -1.6
PTPN9P43378 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 DDX18P5-201ENST00000534547 1306 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.08□□□□□ -1.6
PTPN9P43378 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.08□□□□□ -1.6
PTPN9P43378 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 RNA5SP27-201ENST00000363839 119 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 BMS1P3-201ENST00000372011 932 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 U6.112-201ENST00000384129 70 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AL645927.1-201ENST00000396783 406 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 TCEA1P4-201ENST00000415066 844 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.08□□□□□ -1.6
PTPN9P43378 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.08□□□□□ -1.6
PTPN9P43378 PSMD10P3-201ENST00000437000 448 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 EXOSC3P1-201ENST00000448649 500 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 SLC25A18P1-201ENST00000449385 454 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 AC002553.2-201ENST00000453217 340 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AC004453.1-201ENST00000487895 408 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 RN7SL558P-201ENST00000497468 299 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.08□□□□□ -1.6
PTPN9P43378 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 OR5M14P-201ENST00000506803 618 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 HMGB3P16-201ENST00000508037 287 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC5.08□□□□□ -1.6
PTPN9P43378 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.08□□□□□ -1.6
PTPN9P43378 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 OR8G5-201ENST00000524943 1041 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 MORF4L1P3-201ENST00000525966 950 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.08□□□□□ -1.6
PTPN9P43378 OR8K4P-201ENST00000534608 872 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.08□□□□□ -1.6
PTPN9P43378 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 AL049839.1-201ENST00000556151 657 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 AC027104.1-201ENST00000563702 681 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 MTCO2P2-201ENST00000591258 225 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.08□□□□□ -1.6
PTPN9P43378 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 AC011453.2-201ENST00000603737 729 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AC073387.2-201ENST00000604797 784 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AC096586.1-201ENST00000610267 561 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AL022401.1-201ENST00000619498 108 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AC109809.1-201ENST00000619665 545 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 MIR6719-201ENST00000622428 87 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTPN9P43378 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.08□□□□□ -1.6
PTPN9P43378 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
PTPN9P43378 MAPK10-349ENST00000641767 3661 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 AL034370.1-201ENST00000397254 1590 ntBASIC5.08□□□□□ -1.6
PTPN9P43378 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTPN9P43378 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.07□□□□□ -1.6
PTPN9P43378 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTPN9P43378 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTPN9P43378 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTPN9P43378 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTPN9P43378 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
PTPN9P43378 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC5.07□□□□□ -1.6
PTPN9P43378 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTPN9P43378 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTPN9P43378 DNAJC19P6-201ENST00000401853 280 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 RN7SKP278-201ENST00000410504 342 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.07□□□□□ -1.6
PTPN9P43378 CKS1BP6-201ENST00000424932 240 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 PRPF38AP2-201ENST00000438179 851 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 AC112498.1-201ENST00000444401 332 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 AL035407.2-201ENST00000454090 378 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 RPL6P9-201ENST00000466502 859 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 RNU6-1028P-201ENST00000517164 93 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 RNU6-709P-201ENST00000517257 104 ntBASIC5.07□□□□□ -1.6
PTPN9P43378 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms