Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC026348.1-201ENST00000462549 1053 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC008638.1-201ENST00000506035 866 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 RNA5SP249-201ENST00000516127 99 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC022882.1-201ENST00000532142 501 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 HMGN2P6-201ENST00000551091 273 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 AC044860.2-201ENST00000561005 179 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.78□□□□□ -1.64
HNF4AP41235 AC004775.1-201ENST00000607389 753 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 AC253576.2-201ENST00000618815 580 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 AC019206.1-201ENST00000621938 425 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 OR14L1P-202ENST00000641545 3009 ntBASIC4.78□□□□□ -1.64
HNF4AP41235 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.78□□□□□ -1.64
HNF4AP41235 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.78□□□□□ -1.64
HNF4AP41235 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HNF4AP41235 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
HNF4AP41235 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HNF4AP41235 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.78□□□□□ -1.64
HNF4AP41235 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.78□□□□□ -1.64
HNF4AP41235 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 RNA5SP428-201ENST00000365129 132 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.77□□□□□ -1.65
HNF4AP41235 SNORA70-201ENST00000384436 135 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 HSPD1P16-201ENST00000402302 394 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 RN7SKP125-201ENST00000410481 302 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 XKRYP4-201ENST00000414395 483 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 TCEA1P4-201ENST00000415066 844 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AF186996.5-201ENST00000418098 904 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AC013410.2-201ENST00000422627 201 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 IPMKP1-201ENST00000425988 855 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 ELOCP11-201ENST00000436690 332 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 PTMAP6-201ENST00000439110 327 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 CEACAMP7-201ENST00000444105 496 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 ELOCP16-201ENST00000444494 332 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 XKRYP5-201ENST00000449659 483 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 RPL23AP23-201ENST00000452590 471 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.77□□□□□ -1.65
HNF4AP41235 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.77□□□□□ -1.65
HNF4AP41235 RPL7AP6-201ENST00000477943 801 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 RN7SL319P-201ENST00000480656 221 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 FTH1P24-201ENST00000503502 462 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC112206.4-201ENST00000515142 405 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 RNA5SP303-201ENST00000516192 130 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.77□□□□□ -1.65
HNF4AP41235 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC005868.1-201ENST00000536421 331 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.77□□□□□ -1.65
HNF4AP41235 AL161713.1-201ENST00000555538 145 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.77□□□□□ -1.65
HNF4AP41235 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC011374.2-201ENST00000607135 526 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AC016542.1-201ENST00000608259 493 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AC006946.3-201ENST00000609791 756 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AC090510.2-201ENST00000617465 629 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 AP002799.1-201ENST00000623552 423 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.77□□□□□ -1.65
HNF4AP41235 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HNF4AP41235 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
HNF4AP41235 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.77□□□□□ -1.65
HNF4AP41235 AC107068.1-201ENST00000563286 4218 ntBASIC4.77□□□□□ -1.65
HNF4AP41235 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
HNF4AP41235 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HNF4AP41235 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
HNF4AP41235 AC022031.1-201ENST00000585985 2593 ntBASIC4.76□□□□□ -1.65
HNF4AP41235 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
HNF4AP41235 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.76□□□□□ -1.65
HNF4AP41235 RNU6-98P-201ENST00000384173 107 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms