Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXC4P09017 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
HOXC4P09017 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC4P09017 VPS35P1-201ENST00000563400 1518 ntBASIC4.36□□□□□ -1.71
HOXC4P09017 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
HOXC4P09017 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC4P09017 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC4P09017 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC4P09017 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
HOXC4P09017 RNA5SP307-201ENST00000362863 116 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 RNA5SP151-201ENST00000365632 117 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXC4P09017 AL049693.1-201ENST00000402760 611 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXC4P09017 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXC4P09017 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC4P09017 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC4P09017 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC4P09017 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC4P09017 AC108751.2-201ENST00000469993 231 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC4P09017 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXC4P09017 AC091167.1-201ENST00000492017 396 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 AC108022.1-201ENST00000493466 478 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC4P09017 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXC4P09017 AC022616.2-201ENST00000523185 300 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 AC138701.1-201ENST00000524329 714 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC4P09017 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC4P09017 AC090515.3-201ENST00000560431 315 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
HOXC4P09017 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC4P09017 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC4P09017 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC4P09017 AC025175.1-201ENST00000606482 759 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC4P09017 AC131238.1-201ENST00000617135 328 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 AC234782.5-201ENST00000617723 324 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 AC016717.3-201ENST00000624730 554 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 MIR3653-201ENST00000625572 110 ntBASIC4.35□□□□□ -1.71
HOXC4P09017 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.35□□□□□ -1.71
HOXC4P09017 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXC4P09017 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.35□□□□□ -1.71
HOXC4P09017 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HOXC4P09017 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.35□□□□□ -1.71
HOXC4P09017 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXC4P09017 DDX18P4-201ENST00000511690 1966 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXC4P09017 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC4P09017 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.34□□□□□ -1.71
HOXC4P09017 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXC4P09017 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC4P09017 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXC4P09017 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC4P09017 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC4P09017 MIR331-201ENST00000362302 94 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 Y_RNA.62-201ENST00000362840 99 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 RNU1-63P-201ENST00000383902 164 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC4P09017 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXC4P09017 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXC4P09017 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.34□□□□□ -1.71
HOXC4P09017 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXC4P09017 UBE2V1P3-201ENST00000439651 417 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 AL512326.1-201ENST00000443050 721 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC4P09017 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.34□□□□□ -1.71
HOXC4P09017 AC009963.2-201ENST00000453431 138 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 DDX39BP2-208ENST00000453923 258 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 MTCO3P42-201ENST00000509488 518 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 MTCO3P39-201ENST00000514812 518 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 RPS27AP18-201ENST00000515536 459 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXC4P09017 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXC4P09017 AC023575.1-201ENST00000580510 358 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 KPNA2P3-201ENST00000584190 848 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HOXC4P09017 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC4P09017 AL023881.1-201ENST00000621088 301 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.34□□□□□ -1.71
HOXC4P09017 AP000843.1-201ENST00000624880 701 ntBASIC4.34□□□□□ -1.71
HOXC4P09017 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXC4P09017 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.34□□□□□ -1.71
HOXC4P09017 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
HOXC4P09017 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HOXC4P09017 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.34□□□□□ -1.71
HOXC4P09017 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.34□□□□□ -1.72
HOXC4P09017 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.34□□□□□ -1.72
HOXC4P09017 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
HOXC4P09017 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
HOXC4P09017 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC4P09017 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC4P09017 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.33□□□□□ -1.72
HOXC4P09017 HSPD1P14-201ENST00000432666 1618 ntBASIC4.33□□□□□ -1.72
HOXC4P09017 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
HOXC4P09017 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HOXC4P09017 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms