Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 AC011471.4-201ENST00000638271 216 ntBASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 5S_rRNA.29-201ENST00000641250 107 ntBASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC7.35□□□□□ -1.23
LIMD1Q9UGP4 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 NELL2-217ENST00000551601 3148 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 SNORD35A-201ENST00000363389 86 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 PKIB-203ENST00000368446 556 ntTSL 2 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 RNU6-474P-201ENST00000384243 107 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 RNU6-1297P-201ENST00000384415 104 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 EIF5P1-201ENST00000400019 1231 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 RNU6-1148P-201ENST00000410992 104 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AL451054.2-201ENST00000420896 202 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC006548.1-201ENST00000427470 102 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 RPL23AP30-201ENST00000432419 501 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AL954705.1-201ENST00000435277 559 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AL049734.2-201ENST00000441066 616 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 HSPE1P28-201ENST00000443139 211 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC012512.1-201ENST00000446594 718 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 HMGB1P4-201ENST00000455362 567 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC018638.3-201ENST00000461273 132 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 ST13P14-201ENST00000474095 734 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 TXNP6-201ENST00000510190 310 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC022296.2-201ENST00000512424 202 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC011853.1-201ENST00000518911 454 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 HMGB1P42-201ENST00000532126 553 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 MIR6071-201ENST00000616741 78 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 MIR8089-201ENST00000620165 82 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 CR381572.1-201ENST00000625098 102 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 MIR1910-201ENST00000636955 80 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 AL139805.2-201ENST00000455305 2433 ntBASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
LIMD1Q9UGP4 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
LIMD1Q9UGP4 FSTL5-203ENST00000427802 2920 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
LIMD1Q9UGP4 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.24
LIMD1Q9UGP4 TMEM135-202ENST00000340353 3938 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIMD1Q9UGP4 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIMD1Q9UGP4 MTND5P1-201ENST00000445440 1375 ntBASIC7.33□□□□□ -1.24
LIMD1Q9UGP4 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
LIMD1Q9UGP4 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIMD1Q9UGP4 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
LIMD1Q9UGP4 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
LIMD1Q9UGP4 AC004014.2-201ENST00000623718 5122 ntBASIC7.33□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms