Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 REG4-203ENST00000369401 2327 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC7.54□□□□□ -1.2
COL9A1P20849 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
COL9A1P20849 AL161781.1-201ENST00000354277 403 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 Y_RNA.270-201ENST00000364693 104 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 RNU6-1029P-201ENST00000384109 107 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 RPL21P1-201ENST00000399532 476 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 MIR1252-201ENST00000408861 65 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 RNU2-23P-201ENST00000410545 195 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 RNU2-38P-201ENST00000410856 79 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC7.54□□□□□ -1.2
COL9A1P20849 AC068533.1-201ENST00000418542 415 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
COL9A1P20849 TRBV29OR9-2-201ENST00000427589 333 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 MED13P1-201ENST00000428342 171 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC7.54□□□□□ -1.2
COL9A1P20849 AC020550.1-201ENST00000447385 163 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 MTND4LP30-201ENST00000454092 297 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 AC112492.4-201ENST00000456549 352 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 RN7SL284P-201ENST00000498823 275 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 AC116337.1-201ENST00000509680 687 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 AC111194.1-201ENST00000509711 422 ntTSL 3 BASIC7.54□□□□□ -1.2
COL9A1P20849 PRMT5P1-201ENST00000514351 598 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 SCARNA20.1-201ENST00000516009 138 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC7.54□□□□□ -1.2
COL9A1P20849 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7.54□□□□□ -1.2
COL9A1P20849 AC128657.1-201ENST00000549459 145 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC7.54□□□□□ -1.2
COL9A1P20849 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC7.54□□□□□ -1.2
COL9A1P20849 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC7.54□□□□□ -1.2
COL9A1P20849 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC7.54□□□□□ -1.2
COL9A1P20849 MIR4428-201ENST00000584884 73 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC7.54□□□□□ -1.2
COL9A1P20849 AC124319.3-201ENST00000616832 526 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
COL9A1P20849 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC7.54□□□□□ -1.2
COL9A1P20849 AC016831.3-201ENST00000446451 1723 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 RPL7L1-208ENST00000493763 4476 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 THADA-202ENST00000402360 2974 ntTSL 5 BASIC7.54□□□□□ -1.2
COL9A1P20849 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 RBM5-201ENST00000347869 3188 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 ST5-237ENST00000530991 3396 ntTSL 2 BASIC7.54□□□□□ -1.2
COL9A1P20849 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC7.54□□□□□ -1.2
COL9A1P20849 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.54□□□□□ -1.2
COL9A1P20849 AC127459.1-201ENST00000563129 2768 ntBASIC7.54□□□□□ -1.2
COL9A1P20849 CD96-201ENST00000283285 4324 ntAPPRIS P4 TSL 1 (best) BASIC7.54□□□□□ -1.2
COL9A1P20849 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 ABCA9-202ENST00000453985 6116 ntTSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 NLRP3-202ENST00000348069 3828 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 SAMMSON-213ENST00000641336 1521 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC7.53□□□□□ -1.2
COL9A1P20849 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 PIWIL2-204ENST00000521356 3488 ntTSL 2 BASIC7.53□□□□□ -1.2
COL9A1P20849 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 PHYHIPL-202ENST00000373880 3578 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC7.53□□□□□ -1.2
COL9A1P20849 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC7.53□□□□□ -1.2
COL9A1P20849 CTH-202ENST00000370938 1805 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 RNU6-343P-201ENST00000364709 104 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 SNORD50B-201ENST00000364995 70 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 MIR498-201ENST00000385134 124 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 MT-TW-201ENST00000387382 68 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 RN7SKP91-201ENST00000410852 288 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 BX323014.1-201ENST00000412876 237 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 COX6CP15-201ENST00000426313 211 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 MTATP6P16-201ENST00000434543 526 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 RPL21P133-201ENST00000443666 476 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AL118520.1-201ENST00000450770 291 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 NANOGP10-201ENST00000453325 895 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 HMGN3P1-201ENST00000453847 193 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AC004801.2-202ENST00000463559 283 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC7.53□□□□□ -1.2
COL9A1P20849 AC108688.1-201ENST00000485817 713 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AC116562.3-201ENST00000506136 177 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC7.53□□□□□ -1.2
COL9A1P20849 AC008496.1-201ENST00000509131 295 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AC008562.1-201ENST00000521763 330 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 AP005639.1-201ENST00000526939 192 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AC068587.5-201ENST00000528506 175 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 DEFB109D-201ENST00000529497 240 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC7.53□□□□□ -1.2
COL9A1P20849 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC7.53□□□□□ -1.2
COL9A1P20849 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms