Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RNU11-201ENST00000387069 134 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 SNORD65-201ENST00000391079 73 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 RN7SKP100-201ENST00000411258 284 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 NPM1P40-201ENST00000412758 733 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AL356968.2-201ENST00000412769 1257 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 RPL12P9-201ENST00000412942 488 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC019050.1-201ENST00000418508 492 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AL160175.1-201ENST00000428124 247 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 USP9YP14-201ENST00000430663 563 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 NDUFA5P10-201ENST00000432147 357 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AL450023.3-201ENST00000440592 271 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 MTND1P27-201ENST00000451117 902 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC105420.1-201ENST00000504389 582 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC016559.2-201ENST00000510759 359 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 AP003080.1-202ENST00000526526 915 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 AL121839.1-201ENST00000556233 1185 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC061975.8-201ENST00000587058 721 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AL360012.1-201ENST00000602813 131 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC018695.5-201ENST00000605872 315 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 uc_338.18-201ENST00000615451 175 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AC010435.1-201ENST00000623353 1177 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 CR381572.2-201ENST00000624852 397 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 AP000550.3-201ENST00000637734 379 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 Z95331.1-201ENST00000623075 23112 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
HLA-DOAP06340 ZNF402P-201ENST00000404435 3100 ntBASIC5.85□□□□□ -1.47
HLA-DOAP06340 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
HLA-DOAP06340 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
HLA-DOAP06340 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.85□□□□□ -1.47
HLA-DOAP06340 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC013442.1-201ENST00000397347 228 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 RN7SKP182-201ENST00000410772 298 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AL807761.1-201ENST00000417622 171 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 QRSL1P2-201ENST00000418582 964 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC004074.1-201ENST00000421810 1063 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC073264.2-201ENST00000448886 166 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 TPT1P13-201ENST00000449760 499 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AL691482.1-201ENST00000453255 87 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 CBX1P2-201ENST00000453841 458 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 RPL21P47-201ENST00000483696 477 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 RPSAP51-201ENST00000497462 645 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC087360.1-201ENST00000518788 616 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AP001880.2-201ENST00000538233 448 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 MTND4P33-201ENST00000556706 766 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC234771.5-201ENST00000600161 514 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC079610.2-201ENST00000604818 690 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC245100.7-201ENST00000609678 442 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 MIR6780A-201ENST00000615089 68 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 AC091932.2-201ENST00000623014 291 ntBASIC5.84□□□□□ -1.47
HLA-DOAP06340 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
HLA-DOAP06340 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HLA-DOAP06340 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.84□□□□□ -1.48
HLA-DOAP06340 ZNF90P1-201ENST00000480493 1951 ntBASIC5.84□□□□□ -1.48
HLA-DOAP06340 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.84□□□□□ -1.48
HLA-DOAP06340 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HLA-DOAP06340 ZNF876P-202ENST00000398732 1485 ntBASIC5.83□□□□□ -1.48
HLA-DOAP06340 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 145.5 ms