Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AC091178.1-203ENST00000584586 279 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 BPIFA4P-203ENST00000603168 689 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AL122125.1-201ENST00000616999 600 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AL121890.2-201ENST00000617644 465 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AL672167.1-203ENST00000641299 2975 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 UBBP2-201ENST00000376781 231 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 RPL23AP59-201ENST00000399415 461 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 ELOCP19-201ENST00000411919 318 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 HSPE1P16-201ENST00000426640 348 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 DNAJC19P7-201ENST00000428811 344 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AC068287.1-201ENST00000430283 295 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 MTND2P21-201ENST00000436242 1042 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 H2AFZP6-201ENST00000444403 394 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AC002553.2-201ENST00000453217 340 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 MTND2P28-201ENST00000457540 1044 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 CDH12P2-201ENST00000504393 298 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AP001160.4-201ENST00000596971 382 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AC003001.2-201ENST00000616294 831 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 MIR6891-201ENST00000618788 93 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AP005019.3-201ENST00000620418 560 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 MIR7641-1-201ENST00000627518 61 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 LINC01808-202ENST00000641680 1116 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 AC139769.1-204ENST00000472297 1931 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 SAMMSON-213ENST00000641336 1521 ntBASIC4.56□□□□□ -1.68
LHX3Q9UBR4 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.56□□□□□ -1.68
LHX3Q9UBR4 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 RNA5SP447-201ENST00000363749 119 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 RNU1-130P-201ENST00000363930 160 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 CCNB2P1-201ENST00000399411 1150 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 FCF1P5-201ENST00000406490 482 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 MIR1271-201ENST00000408537 86 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 Y_RNA.625-201ENST00000411256 107 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 FAR2P2-201ENST00000413041 594 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 TMSB10P2-201ENST00000416049 131 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 FAR2P4-202ENST00000425399 584 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AL732292.1-201ENST00000426692 226 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 RPL12P28-201ENST00000430852 489 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 TPT1P13-201ENST00000449760 499 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC012671.1-201ENST00000451912 203 ntBASIC4.55□□□□□ -1.68
LHX3Q9UBR4 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.55□□□□□ -1.68
LHX3Q9UBR4 AC013356.1-201ENST00000489027 564 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms