Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 U73023.1-201ENST00000603134 700 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC092354.1-201ENST00000606057 376 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AL139099.4-201ENST00000614802 114 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC092650.2-201ENST00000619984 902 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC116563.2-201ENST00000624751 535 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC026634.1-201ENST00000634369 198 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC093671.1-201ENST00000624981 2929 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 PDZK1P1-202ENST00000425209 1350 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RNU1-150P-201ENST00000362491 162 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RN7SKP15-201ENST00000364742 309 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 Y_RNA.553-201ENST00000384670 102 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RPL7P8-201ENST00000411964 730 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 USP9YP33-201ENST00000412220 421 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 MTCO3P1-205ENST00000422088 832 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 USP9YP35-201ENST00000435696 412 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC144530.1-201ENST00000452862 555 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 NF1P3-201ENST00000457709 450 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RNU6-956P-201ENST00000458868 103 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 snoU13.29-201ENST00000459370 104 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RPL21P71-201ENST00000465598 459 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC116337.2-201ENST00000477662 156 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RPL7P38-201ENST00000488396 739 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AL024509.2-201ENST00000493462 493 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 HMGB1P44-201ENST00000508597 572 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC114781.3-201ENST00000512083 142 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC008494.2-201ENST00000514544 370 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC027309.2-201ENST00000520566 192 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC060788.1-201ENST00000521318 469 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC007599.1-201ENST00000568688 1174 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 COX6CP7-201ENST00000597056 208 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC015982.1-201ENST00000608113 465 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC243654.2-201ENST00000612843 443 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC009878.1-201ENST00000621819 340 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 AC135068.5-201ENST00000624197 983 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
TRIM39Q9HCM9 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms