Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 RNA5SP90-201ENST00000364801 99 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
HPS3Q969F9 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 RNA5SP187-201ENST00000384400 119 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 RNY3P9-201ENST00000384727 106 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 MIR105-2-201ENST00000385083 81 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC119751.3-201ENST00000399720 670 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.78□□□□□ -1.48
HPS3Q969F9 SNORA11C-201ENST00000408532 129 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 RN7SKP16-201ENST00000410180 299 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC5.78□□□□□ -1.48
HPS3Q969F9 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC5.78□□□□□ -1.48
HPS3Q969F9 RAC1P8-201ENST00000427086 527 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 NANOGP2-201ENST00000435391 727 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 MTATP6P26-201ENST00000445926 662 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 RNF148-202ENST00000447240 839 ntTSL 2 BASIC5.78□□□□□ -1.48
HPS3Q969F9 AL606490.1-201ENST00000452266 765 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 AC079168.1-201ENST00000458741 345 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 RN7SL189P-201ENST00000468631 289 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC011037.1-201ENST00000483964 558 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.78□□□□□ -1.48
HPS3Q969F9 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC005351.1-201ENST00000511152 786 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC5.78□□□□□ -1.48
HPS3Q969F9 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.78□□□□□ -1.48
HPS3Q969F9 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.78□□□□□ -1.48
HPS3Q969F9 MTATP6P15-201ENST00000527233 835 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 MRPS36P5-201ENST00000551909 298 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC5.78□□□□□ -1.48
HPS3Q969F9 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC009597.2-201ENST00000604659 592 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 AC211433.2-201ENST00000608433 387 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC091932.2-201ENST00000623014 291 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 AC015726.3-201ENST00000624501 418 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 AC019226.2-201ENST00000625973 424 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.78□□□□□ -1.48
HPS3Q969F9 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
HPS3Q969F9 TCP11X1-202ENST00000622971 1372 ntBASIC5.78□□□□□ -1.48
HPS3Q969F9 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
HPS3Q969F9 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
HPS3Q969F9 AC027228.2-201ENST00000567141 2154 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HPS3Q969F9 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 AL356320.2-201ENST00000417263 507 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC5.77□□□□□ -1.49
HPS3Q969F9 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.77□□□□□ -1.49
HPS3Q969F9 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC5.77□□□□□ -1.49
HPS3Q969F9 MTCO3P21-201ENST00000430791 643 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 SPRYD7P1-201ENST00000443861 570 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 RPL7AP52-201ENST00000458096 790 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 AC024558.1-201ENST00000505008 528 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 AC006427.1-201ENST00000514359 712 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.77□□□□□ -1.49
HPS3Q969F9 AC022360.1-201ENST00000521058 340 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 AC010306.1-201ENST00000523223 1117 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.77□□□□□ -1.49
HPS3Q969F9 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.77□□□□□ -1.49
HPS3Q969F9 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.77□□□□□ -1.49
HPS3Q969F9 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 AC139769.3-201ENST00000618383 175 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 AC006840.1-201ENST00000623069 542 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 CASC19-264ENST00000641912 1184 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 AC005261.4-201ENST00000600047 1385 ntBASIC5.77□□□□□ -1.49
HPS3Q969F9 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HPS3Q969F9 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HPS3Q969F9 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.77□□□□□ -1.49
HPS3Q969F9 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms