Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HNF4AP41235 METTL21EP-201ENST00000298105 713 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HNF4AP41235 RNA5SP507-201ENST00000363603 121 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HNF4AP41235 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 Z97832.1-201ENST00000402490 328 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.81□□□□□ -1.64
HNF4AP41235 GJA6P-201ENST00000415117 1042 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 LINC01347-201ENST00000417964 355 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 AL031736.2-201ENST00000426573 787 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.81□□□□□ -1.64
HNF4AP41235 DYNLL1P7-201ENST00000429273 258 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 CEACAMP1-201ENST00000434624 1035 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 AL590762.3-201ENST00000436372 640 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 MTND4P15-201ENST00000437913 1033 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.81□□□□□ -1.64
HNF4AP41235 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.81□□□□□ -1.64
HNF4AP41235 AC097499.1-201ENST00000444277 208 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HNF4AP41235 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC4.81□□□□□ -1.64
HNF4AP41235 AC092685.1-201ENST00000447960 1243 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 TCEA1P1-201ENST00000449716 880 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.81□□□□□ -1.64
HNF4AP41235 RPL37P3-201ENST00000456825 293 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 RN7SL517P-201ENST00000462240 305 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 NDUFB4P12-201ENST00000513465 390 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 ENPP7P9-201ENST00000514456 627 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 RN7SKP147-201ENST00000517154 244 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.81□□□□□ -1.64
HNF4AP41235 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.81□□□□□ -1.64
HNF4AP41235 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HNF4AP41235 AL049830.4-201ENST00000555149 351 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.81□□□□□ -1.64
HNF4AP41235 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.81□□□□□ -1.64
HNF4AP41235 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.81□□□□□ -1.64
HNF4AP41235 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 AC087783.2-201ENST00000605070 562 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 AL049794.2-201ENST00000616301 365 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 AC015914.2-201ENST00000618167 288 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
HNF4AP41235 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 ECM1P2-201ENST00000503354 1577 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HNF4AP41235 SAGE2P-201ENST00000420011 2126 ntBASIC4.81□□□□□ -1.64
HNF4AP41235 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
HNF4AP41235 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HNF4AP41235 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
HNF4AP41235 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HNF4AP41235 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HNF4AP41235 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.8□□□□□ -1.64
HNF4AP41235 Y_RNA.110-201ENST00000363220 99 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 RNU4-4P-201ENST00000364588 130 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 MIR142-201ENST00000384835 87 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 SPTLC1P2-201ENST00000407089 121 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AP000357.1-201ENST00000409926 1165 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 RNU2-17P-201ENST00000410290 190 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 RN7SKP213-201ENST00000410746 298 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.8□□□□□ -1.64
HNF4AP41235 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.8□□□□□ -1.64
HNF4AP41235 RPL36AP10-201ENST00000421785 322 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.8□□□□□ -1.64
HNF4AP41235 MTND4LP7-201ENST00000431728 294 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.8□□□□□ -1.64
HNF4AP41235 RHOT1P3-201ENST00000436571 331 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.8□□□□□ -1.64
HNF4AP41235 ACTR3P2-201ENST00000439585 1257 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC006326.1-201ENST00000445465 787 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 RPS15AP29-201ENST00000445539 400 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 TPTE2P6-202ENST00000445572 1007 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AL031584.1-201ENST00000447169 754 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 MYO5BP2-201ENST00000449815 1277 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.8□□□□□ -1.64
HNF4AP41235 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.8□□□□□ -1.64
HNF4AP41235 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.8□□□□□ -1.64
HNF4AP41235 AL161747.1-201ENST00000480068 358 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC109462.1-201ENST00000491087 368 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.8□□□□□ -1.64
HNF4AP41235 Y_RNA.719-201ENST00000517156 106 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HNF4AP41235 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.8□□□□□ -1.64
HNF4AP41235 CKS1BP1-201ENST00000555221 240 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC016180.1-201ENST00000567945 403 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 TVP23CP2-201ENST00000571473 623 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 MIR4458-201ENST00000578872 75 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.8□□□□□ -1.64
HNF4AP41235 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.8□□□□□ -1.64
HNF4AP41235 MIR4691-201ENST00000583764 85 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 EIF1P5-201ENST00000585002 234 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 OR7E18P-201ENST00000592589 702 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 PCNAP1-202ENST00000595299 752 ntBASIC4.8□□□□□ -1.64
HNF4AP41235 AP003117.1-201ENST00000602771 554 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms