Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AP001002.1-201ENST00000625148 1513 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 AP001273.1-201ENST00000624493 3152 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL18A1P39060 CCAT2-201ENST00000630920 1752 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.5□□□□□ -1.53
COL18A1P39060 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.5□□□□□ -1.53
COL18A1P39060 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL18A1P39060 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL18A1P39060 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL18A1P39060 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.5□□□□□ -1.53
COL18A1P39060 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL18A1P39060 AC110792.1-201ENST00000491826 472 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL18A1P39060 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.5□□□□□ -1.53
COL18A1P39060 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.5□□□□□ -1.53
COL18A1P39060 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL18A1P39060 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.5□□□□□ -1.53
COL18A1P39060 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.5□□□□□ -1.53
COL18A1P39060 AC008966.2-201ENST00000606157 453 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 MIR8069-1-201ENST00000616627 86 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 MIR8069-2-201ENST00000621412 86 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 AL049781.1-201ENST00000623195 3585 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL18A1P39060 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
COL18A1P39060 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL18A1P39060 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL18A1P39060 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL18A1P39060 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
COL18A1P39060 SNORD66.1-201ENST00000391230 76 ntBASIC5.49□□□□□ -1.53
COL18A1P39060 AC068533.1-201ENST00000418542 415 ntBASIC5.49□□□□□ -1.53
COL18A1P39060 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.49□□□□□ -1.53
COL18A1P39060 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.49□□□□□ -1.53
COL18A1P39060 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.49□□□□□ -1.53
COL18A1P39060 RPL7P15-201ENST00000461190 712 ntBASIC5.49□□□□□ -1.53
COL18A1P39060 AL359219.2-201ENST00000555184 348 ntBASIC5.49□□□□□ -1.53
COL18A1P39060 AL160281.1-201ENST00000605307 311 ntBASIC5.49□□□□□ -1.53
COL18A1P39060 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL18A1P39060 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL18A1P39060 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL18A1P39060 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.49□□□□□ -1.53
COL18A1P39060 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL18A1P39060 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL18A1P39060 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.48□□□□□ -1.53
COL18A1P39060 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL18A1P39060 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.48□□□□□ -1.53
COL18A1P39060 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL18A1P39060 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.48□□□□□ -1.53
COL18A1P39060 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL18A1P39060 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
COL18A1P39060 OR4F13P-201ENST00000428478 931 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL18A1P39060 AC006499.5-201ENST00000505037 514 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 HPRT1P2-201ENST00000505250 544 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 AC124068.1-201ENST00000563131 678 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 BNIP3P11-201ENST00000603878 563 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 AC012468.1-201ENST00000604888 430 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 AC007179.3-201ENST00000604976 235 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 AC084757.4-201ENST00000616350 526 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 AC020978.9-201ENST00000624380 1141 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL18A1P39060 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL18A1P39060 ZNF285B-201ENST00000561698 1767 ntBASIC5.48□□□□□ -1.53
COL18A1P39060 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL18A1P39060 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL18A1P39060 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.48□□□□□ -1.53
COL18A1P39060 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL18A1P39060 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.47□□□□□ -1.53
COL18A1P39060 AC233968.1-201ENST00000611212 1300 ntBASIC5.47□□□□□ -1.53
COL18A1P39060 MIR1179-201ENST00000408703 91 ntBASIC5.47□□□□□ -1.53
COL18A1P39060 UBTFL3-201ENST00000418934 1024 ntBASIC5.47□□□□□ -1.53
COL18A1P39060 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.47□□□□□ -1.53
COL18A1P39060 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.47□□□□□ -1.53
COL18A1P39060 UBTFL6-201ENST00000477929 1024 ntBASIC5.47□□□□□ -1.53
COL18A1P39060 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.47□□□□□ -1.53
COL18A1P39060 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.47□□□□□ -1.53
COL18A1P39060 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.47□□□□□ -1.53
COL18A1P39060 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.47□□□□□ -1.53
COL18A1P39060 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.47□□□□□ -1.53
COL18A1P39060 BNIP3P19-201ENST00000605397 577 ntBASIC5.47□□□□□ -1.53
COL18A1P39060 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.47□□□□□ -1.53
COL18A1P39060 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.47□□□□□ -1.53
COL18A1P39060 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL18A1P39060 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.47□□□□□ -1.53
COL18A1P39060 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL18A1P39060 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL18A1P39060 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL18A1P39060 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
COL18A1P39060 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL18A1P39060 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.47□□□□□ -1.53
COL18A1P39060 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL18A1P39060 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.47□□□□□ -1.53
COL18A1P39060 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC5.47□□□□□ -1.53
COL18A1P39060 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.47□□□□□ -1.53
COL18A1P39060 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC5.47□□□□□ -1.53
COL18A1P39060 AC007688.1-201ENST00000475592 759 ntBASIC5.47□□□□□ -1.53
COL18A1P39060 GAPDHP36-201ENST00000480688 918 ntBASIC5.47□□□□□ -1.53
COL18A1P39060 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.47□□□□□ -1.53
COL18A1P39060 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.47□□□□□ -1.53
COL18A1P39060 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.47□□□□□ -1.53
COL18A1P39060 AC010487.1-201ENST00000594408 1172 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms