Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL354710.1-201ENST00000453641 246 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 RPL7P41-201ENST00000485823 957 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC091965.2-201ENST00000512324 613 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 RNU2-30P-201ENST00000516209 141 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 SCARNA6.1-201ENST00000516989 238 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 RNU6-1261P-201ENST00000517194 104 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AP000873.5-201ENST00000533906 236 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC092851.1-201ENST00000535964 478 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC068714.1-201ENST00000559623 800 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AL512347.1-201ENST00000566420 503 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC080078.2-201ENST00000603766 501 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AL354760.1-201ENST00000608357 643 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC243756.2-201ENST00000618406 463 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 PARP4P2-201ENST00000446672 3326 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC025125.1-201ENST00000624743 1922 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AL442128.2-201ENST00000620246 1824 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC134882.1-201ENST00000603738 1676 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 Y_RNA.25-201ENST00000362528 102 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 VDAC2P1-201ENST00000399358 958 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 OR6C64P-201ENST00000419708 825 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC062016.2-201ENST00000420950 676 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 RPS3AP44-201ENST00000425466 790 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC079807.1-201ENST00000429993 481 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 HLA-DPA3-207ENST00000454398 229 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 PFN1P6-201ENST00000476786 399 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC099521.1-201ENST00000482557 334 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 RN7SL57P-201ENST00000493687 290 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC005912.1-201ENST00000495392 255 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC109481.1-201ENST00000509173 282 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 HSPE1P23-201ENST00000509838 286 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC006499.4-201ENST00000510947 694 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 EIF3KP3-201ENST00000514461 639 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 RN7SKP288-201ENST00000516227 268 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AF279873.1-201ENST00000523393 313 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AP004609.2-201ENST00000532177 190 ntBASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 OTX2-203ENST00000554559 715 ntTSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.85□□□□□ -1.47
TRIM39Q9HCM9 AL049779.3-201ENST00000557141 606 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms