Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MAPK10-349ENST00000641767 3661 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 FCF1P5-201ENST00000406490 482 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 GNRHR2P1-201ENST00000555315 631 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 AL356968.2-201ENST00000412769 1257 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 Z74021.1-201ENST00000423610 407 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 RN7SL271P-201ENST00000487601 295 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 MAPK8-205ENST00000374182 5638 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 RNU1-20P-201ENST00000363314 162 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 CBX1P3-201ENST00000413296 527 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 MIR6868-201ENST00000611215 58 ntBASIC4.1□□□□□ -1.75
VPS13AQ96RL7 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS13AQ96RL7 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 MIR128-1-201ENST00000384921 82 ntBASIC4.09□□□□□ -1.75
VPS13AQ96RL7 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 RPS11P1-201ENST00000451072 473 ntBASIC4.09□□□□□ -1.75
VPS13AQ96RL7 RPL21P8-201ENST00000465083 535 ntBASIC4.09□□□□□ -1.75
VPS13AQ96RL7 CDH12P2-201ENST00000504393 298 ntBASIC4.09□□□□□ -1.75
VPS13AQ96RL7 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 YPEL5P3-201ENST00000547227 352 ntBASIC4.09□□□□□ -1.75
VPS13AQ96RL7 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS13AQ96RL7 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 COX5BP7-201ENST00000414780 274 ntBASIC4.09□□□□□ -1.76
VPS13AQ96RL7 RPS7P15-201ENST00000415804 584 ntBASIC4.09□□□□□ -1.76
VPS13AQ96RL7 RPL12P46-201ENST00000436610 195 ntBASIC4.09□□□□□ -1.76
VPS13AQ96RL7 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 AC017015.1-201ENST00000477387 286 ntBASIC4.09□□□□□ -1.76
VPS13AQ96RL7 HPRT1P2-201ENST00000505250 544 ntBASIC4.09□□□□□ -1.76
VPS13AQ96RL7 NDUFA5P2-201ENST00000519723 344 ntBASIC4.09□□□□□ -1.76
VPS13AQ96RL7 AC005868.1-201ENST00000536421 331 ntBASIC4.09□□□□□ -1.76
VPS13AQ96RL7 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.09□□□□□ -1.76
VPS13AQ96RL7 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.08□□□□□ -1.76
VPS13AQ96RL7 RN7SL197P-201ENST00000466981 299 ntBASIC4.08□□□□□ -1.76
VPS13AQ96RL7 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS13AQ96RL7 AL513477.2-201ENST00000607858 568 ntBASIC4.08□□□□□ -1.76
VPS13AQ96RL7 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC4.08□□□□□ -1.76
VPS13AQ96RL7 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS13AQ96RL7 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS13AQ96RL7 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
VPS13AQ96RL7 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS13AQ96RL7 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms