Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SOX3P41225 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.51□□□□□ -1.69
SOX3P41225 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SOX3P41225 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.51□□□□□ -1.69
SOX3P41225 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC4.51□□□□□ -1.69
SOX3P41225 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.51□□□□□ -1.69
SOX3P41225 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.51□□□□□ -1.69
SOX3P41225 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.5□□□□□ -1.69
SOX3P41225 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SOX3P41225 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 AL359715.4-201ENST00000606629 1436 ntBASIC4.5□□□□□ -1.69
SOX3P41225 RNU4-7P-201ENST00000364758 141 ntBASIC4.5□□□□□ -1.69
SOX3P41225 MT-TP-201ENST00000387461 68 ntBASIC4.5□□□□□ -1.69
SOX3P41225 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.5□□□□□ -1.69
SOX3P41225 AL592291.1-201ENST00000403830 352 ntBASIC4.5□□□□□ -1.69
SOX3P41225 RN7SKP199-201ENST00000410325 305 ntBASIC4.5□□□□□ -1.69
SOX3P41225 RNA5SP113-201ENST00000410486 84 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 AC004074.1-201ENST00000421810 1063 ntBASIC4.5□□□□□ -1.69
SOX3P41225 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SOX3P41225 HSFY7P-201ENST00000432672 318 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC093716.1-201ENST00000435923 377 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 HSFY8P-201ENST00000437934 318 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SOX3P41225 AL157827.1-201ENST00000447622 132 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 AC000111.2-201ENST00000448200 210 ntBASIC4.5□□□□□ -1.69
SOX3P41225 OR1H1P-201ENST00000448731 937 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.5□□□□□ -1.69
SOX3P41225 RBMY2TP-201ENST00000451162 947 ntBASIC4.5□□□□□ -1.69
SOX3P41225 CALM1P2-201ENST00000452941 448 ntBASIC4.5□□□□□ -1.69
SOX3P41225 HSFY5P-201ENST00000453726 309 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AURKAPS2-201ENST00000454983 333 ntBASIC4.5□□□□□ -1.69
SOX3P41225 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.5□□□□□ -1.69
SOX3P41225 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.5□□□□□ -1.69
SOX3P41225 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SOX3P41225 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.5□□□□□ -1.69
SOX3P41225 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.5□□□□□ -1.69
SOX3P41225 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 UBE2FP2-201ENST00000566646 462 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC021483.2-201ENST00000567415 758 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 MIR4700-201ENST00000578311 74 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.5□□□□□ -1.69
SOX3P41225 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SOX3P41225 AC011453.2-201ENST00000603737 729 ntBASIC4.5□□□□□ -1.69
SOX3P41225 SNORD91B-202ENST00000608459 222 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC024933.1-201ENST00000608472 348 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AL122125.1-201ENST00000616999 600 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC095038.2-201ENST00000621464 1070 ntBASIC4.5□□□□□ -1.69
SOX3P41225 AC073342.3-201ENST00000624211 193 ntBASIC4.5□□□□□ -1.69
SOX3P41225 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
SOX3P41225 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SOX3P41225 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
SOX3P41225 SDAD1P1-202ENST00000524156 2051 ntBASIC4.5□□□□□ -1.69
SOX3P41225 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SOX3P41225 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.5□□□□□ -1.69
SOX3P41225 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SOX3P41225 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SOX3P41225 AC097461.1-201ENST00000568928 2821 ntBASIC4.5□□□□□ -1.69
SOX3P41225 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
SOX3P41225 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 CASC19-206ENST00000641028 1430 ntBASIC4.49□□□□□ -1.69
SOX3P41225 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
SOX3P41225 SNORA63.3-201ENST00000362682 132 ntBASIC4.49□□□□□ -1.69
SOX3P41225 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
SOX3P41225 TAF9BP2-201ENST00000400856 499 ntBASIC4.49□□□□□ -1.69
SOX3P41225 AP000580.1-201ENST00000404439 358 ntBASIC4.49□□□□□ -1.69
SOX3P41225 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.49□□□□□ -1.69
SOX3P41225 RPL37P18-201ENST00000411602 243 ntBASIC4.49□□□□□ -1.69
SOX3P41225 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.49□□□□□ -1.69
SOX3P41225 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.49□□□□□ -1.69
SOX3P41225 USP9YP9-201ENST00000429406 715 ntBASIC4.49□□□□□ -1.69
SOX3P41225 PTP4A1P3-201ENST00000433661 420 ntBASIC4.49□□□□□ -1.69
SOX3P41225 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.49□□□□□ -1.69
SOX3P41225 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.49□□□□□ -1.69
SOX3P41225 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.49□□□□□ -1.69
SOX3P41225 RN7SL205P-201ENST00000490174 284 ntBASIC4.49□□□□□ -1.69
SOX3P41225 MTCO2P9-201ENST00000503214 694 ntBASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms