Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 NEXMIF-201ENST00000055682 11719 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
USH2AO75445 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.1
USH2AO75445 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC1.9□□□□□ -2.1
USH2AO75445 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC1.9□□□□□ -2.1
USH2AO75445 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
USH2AO75445 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
USH2AO75445 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.1
USH2AO75445 AL355852.1-201ENST00000454081 1771 ntBASIC1.9□□□□□ -2.1
USH2AO75445 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
USH2AO75445 MIR1261-201ENST00000408659 82 ntBASIC1.9□□□□□ -2.11
USH2AO75445 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC1.9□□□□□ -2.11
USH2AO75445 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC1.9□□□□□ -2.11
USH2AO75445 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC1.9□□□□□ -2.11
USH2AO75445 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC1.9□□□□□ -2.11
USH2AO75445 RAB28P3-201ENST00000448325 597 ntBASIC1.9□□□□□ -2.11
USH2AO75445 AC090181.2-201ENST00000602975 672 ntBASIC1.9□□□□□ -2.11
USH2AO75445 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
USH2AO75445 SLC24A4-205ENST00000532405 9950 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC1.9□□□□□ -2.11
USH2AO75445 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 FBN2-208ENST00000619499 10154 ntTSL 5 BASIC1.9□□□□□ -2.11
USH2AO75445 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
USH2AO75445 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 OR11H4-201ENST00000315409 1082 ntBASIC1.9□□□□□ -2.11
USH2AO75445 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
USH2AO75445 RNU1-59P-201ENST00000364829 162 ntBASIC1.9□□□□□ -2.11
USH2AO75445 SNORA70H-201ENST00000383910 135 ntBASIC1.9□□□□□ -2.11
USH2AO75445 PEX12P1-201ENST00000400284 1048 ntBASIC1.9□□□□□ -2.11
USH2AO75445 AMMECR1LP1-201ENST00000415152 841 ntBASIC1.9□□□□□ -2.11
USH2AO75445 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 UBE2V1P3-201ENST00000439651 417 ntBASIC1.9□□□□□ -2.11
USH2AO75445 AC092641.1-201ENST00000440229 772 ntBASIC1.9□□□□□ -2.11
USH2AO75445 ENSA-211ENST00000503345 793 ntTSL 3 BASIC1.9□□□□□ -2.11
USH2AO75445 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC1.9□□□□□ -2.11
USH2AO75445 AC244505.7-201ENST00000599675 272 ntBASIC1.9□□□□□ -2.11
USH2AO75445 U1.25-201ENST00000614085 162 ntBASIC1.9□□□□□ -2.11
USH2AO75445 U1.31-201ENST00000620022 160 ntBASIC1.9□□□□□ -2.11
USH2AO75445 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
USH2AO75445 LINC01808-202ENST00000641680 1116 ntBASIC1.9□□□□□ -2.11
USH2AO75445 TFDP2-215ENST00000489671 9857 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 RIOK3P1-201ENST00000418778 1528 ntBASIC1.9□□□□□ -2.11
USH2AO75445 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC1.9□□□□□ -2.11
USH2AO75445 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC1.9□□□□□ -2.11
USH2AO75445 SETBP1-201ENST00000282030 9899 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
USH2AO75445 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC1.9□□□□□ -2.11
USH2AO75445 AC110792.1-201ENST00000491826 472 ntBASIC1.9□□□□□ -2.11
USH2AO75445 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.9□□□□□ -2.11
USH2AO75445 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC1.9□□□□□ -2.11
USH2AO75445 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC1.9□□□□□ -2.11
USH2AO75445 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC1.9□□□□□ -2.11
USH2AO75445 BPIFA4P-203ENST00000603168 689 ntBASIC1.9□□□□□ -2.11
USH2AO75445 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC1.9□□□□□ -2.11
USH2AO75445 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC1.9□□□□□ -2.11
USH2AO75445 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USH2AO75445 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
USH2AO75445 MAK-202ENST00000354489 3941 ntTSL 5 BASIC1.89□□□□□ -2.11
USH2AO75445 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
USH2AO75445 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC1.89□□□□□ -2.11
USH2AO75445 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC1.89□□□□□ -2.11
USH2AO75445 RPL35P6-201ENST00000490024 372 ntBASIC1.89□□□□□ -2.11
USH2AO75445 MYL12BP2-201ENST00000503948 512 ntBASIC1.89□□□□□ -2.11
USH2AO75445 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC1.89□□□□□ -2.11
USH2AO75445 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC1.89□□□□□ -2.11
USH2AO75445 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC1.89□□□□□ -2.11
USH2AO75445 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC1.89□□□□□ -2.11
USH2AO75445 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC1.89□□□□□ -2.11
USH2AO75445 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC1.89□□□□□ -2.11
USH2AO75445 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC1.89□□□□□ -2.11
USH2AO75445 AC112503.1-201ENST00000608436 391 ntBASIC1.89□□□□□ -2.11
USH2AO75445 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USH2AO75445 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC1.89□□□□□ -2.11
USH2AO75445 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
USH2AO75445 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC1.89□□□□□ -2.11
USH2AO75445 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USH2AO75445 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USH2AO75445 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USH2AO75445 RPS20P14-201ENST00000412545 360 ntBASIC1.89□□□□□ -2.11
USH2AO75445 ARAFP1-201ENST00000422172 605 ntBASIC1.89□□□□□ -2.11
USH2AO75445 AC090018.1-201ENST00000434369 367 ntBASIC1.89□□□□□ -2.11
USH2AO75445 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC1.89□□□□□ -2.11
USH2AO75445 RPS26P28-201ENST00000470806 348 ntBASIC1.89□□□□□ -2.11
USH2AO75445 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC1.89□□□□□ -2.11
USH2AO75445 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC1.89□□□□□ -2.11
USH2AO75445 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC1.89□□□□□ -2.11
USH2AO75445 MTCYBP13-201ENST00000578634 1093 ntBASIC1.89□□□□□ -2.11
USH2AO75445 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC1.89□□□□□ -2.11
USH2AO75445 AC068790.5-201ENST00000602741 355 ntBASIC1.89□□□□□ -2.11
USH2AO75445 AC023762.1-201ENST00000603280 584 ntBASIC1.89□□□□□ -2.11
USH2AO75445 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC1.89□□□□□ -2.11
USH2AO75445 AC139769.1-204ENST00000472297 1931 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms