Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MIR1264-201ENST00000616374 69 ntBASIC4.85□□□□□ -1.63
MSH3P20585 AC009269.6-201ENST00000621778 588 ntBASIC4.85□□□□□ -1.63
MSH3P20585 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.85□□□□□ -1.63
MSH3P20585 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.85□□□□□ -1.63
MSH3P20585 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSH3P20585 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
MSH3P20585 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
MSH3P20585 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH3P20585 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
MSH3P20585 AC083843.3-201ENST00000623679 2186 ntBASIC4.85□□□□□ -1.63
MSH3P20585 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
MSH3P20585 MAPK10-349ENST00000641767 3661 ntBASIC4.85□□□□□ -1.63
MSH3P20585 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.85□□□□□ -1.63
MSH3P20585 SCN1A-220ENST00000641603 12506 ntBASIC4.85□□□□□ -1.63
MSH3P20585 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.84□□□□□ -1.63
MSH3P20585 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.84□□□□□ -1.63
MSH3P20585 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.84□□□□□ -1.63
MSH3P20585 IRF5P1-201ENST00000504852 2164 ntBASIC4.84□□□□□ -1.63
MSH3P20585 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.84□□□□□ -1.63
MSH3P20585 AC008758.3-201ENST00000507003 1829 ntBASIC4.84□□□□□ -1.63
MSH3P20585 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
MSH3P20585 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.84□□□□□ -1.63
MSH3P20585 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
MSH3P20585 AC010132.2-201ENST00000295493 1043 ntBASIC4.84□□□□□ -1.63
MSH3P20585 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 AL109941.1-201ENST00000401925 229 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC092570.3-201ENST00000420113 693 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC007394.1-201ENST00000421941 531 ntBASIC4.84□□□□□ -1.63
MSH3P20585 MTCO2P1-201ENST00000424648 477 ntBASIC4.84□□□□□ -1.63
MSH3P20585 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH3P20585 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH3P20585 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.84□□□□□ -1.63
MSH3P20585 RPL12P3-201ENST00000440080 396 ntBASIC4.84□□□□□ -1.63
MSH3P20585 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 RPL7L1P1-201ENST00000448259 785 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC234781.3-201ENST00000452540 973 ntBASIC4.84□□□□□ -1.63
MSH3P20585 ATP5G1P3-201ENST00000463301 410 ntBASIC4.84□□□□□ -1.63
MSH3P20585 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.84□□□□□ -1.63
MSH3P20585 RPL7P16-201ENST00000479738 738 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC021087.2-201ENST00000504656 1203 ntBASIC4.84□□□□□ -1.63
MSH3P20585 GAPDHP56-201ENST00000506031 988 ntBASIC4.84□□□□□ -1.63
MSH3P20585 BTF3P13-201ENST00000513224 490 ntBASIC4.84□□□□□ -1.63
MSH3P20585 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH3P20585 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.84□□□□□ -1.63
MSH3P20585 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.84□□□□□ -1.63
MSH3P20585 AP001922.4-201ENST00000526967 290 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC021006.3-201ENST00000530771 192 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.84□□□□□ -1.63
MSH3P20585 AC093014.1-201ENST00000548926 724 ntBASIC4.84□□□□□ -1.63
MSH3P20585 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH3P20585 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.84□□□□□ -1.63
MSH3P20585 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.84□□□□□ -1.63
MSH3P20585 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.84□□□□□ -1.63
MSH3P20585 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC4.84□□□□□ -1.63
MSH3P20585 MTCO3P22-201ENST00000603219 784 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC020910.3-201ENST00000603701 874 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC015849.2-201ENST00000605738 409 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC097504.2-201ENST00000608088 454 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC104763.3-201ENST00000613765 618 ntBASIC4.84□□□□□ -1.63
MSH3P20585 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
MSH3P20585 AC022106.2-201ENST00000620114 757 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC023510.2-201ENST00000622162 746 ntBASIC4.84□□□□□ -1.63
MSH3P20585 AC090772.4-201ENST00000623599 362 ntBASIC4.84□□□□□ -1.63
MSH3P20585 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
MSH3P20585 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
MSH3P20585 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.84□□□□□ -1.64
MSH3P20585 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.84□□□□□ -1.64
MSH3P20585 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
MSH3P20585 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.64
MSH3P20585 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.84□□□□□ -1.64
MSH3P20585 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
MSH3P20585 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
MSH3P20585 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH3P20585 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH3P20585 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 UBBP2-201ENST00000376781 231 ntBASIC4.83□□□□□ -1.64
MSH3P20585 HMGB3P7-201ENST00000400214 611 ntBASIC4.83□□□□□ -1.64
MSH3P20585 ATP5F1P6-201ENST00000402768 767 ntBASIC4.83□□□□□ -1.64
MSH3P20585 RSL24D1P1-201ENST00000404972 493 ntBASIC4.83□□□□□ -1.64
MSH3P20585 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH3P20585 RN7SKP125-201ENST00000410481 302 ntBASIC4.83□□□□□ -1.64
MSH3P20585 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 RPS27P18-201ENST00000431701 247 ntBASIC4.83□□□□□ -1.64
MSH3P20585 LYPLA1P1-201ENST00000434514 622 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC093414.1-201ENST00000434712 514 ntBASIC4.83□□□□□ -1.64
MSH3P20585 NPM1P33-201ENST00000438918 872 ntBASIC4.83□□□□□ -1.64
MSH3P20585 MRPL48P1-201ENST00000445390 636 ntBASIC4.83□□□□□ -1.64
MSH3P20585 MOB1AP2-201ENST00000446060 614 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC000111.2-201ENST00000448200 210 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms