Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL356317.1-201ENST00000396110 1436 ntBASIC4.46□□□□□ -1.69
HOXD4P09016 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
HOXD4P09016 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.46□□□□□ -1.69
HOXD4P09016 AL606537.1-201ENST00000607258 2011 ntBASIC4.46□□□□□ -1.69
HOXD4P09016 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.69
HOXD4P09016 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.46□□□□□ -1.69
HOXD4P09016 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
HOXD4P09016 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
HOXD4P09016 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXD4P09016 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
HOXD4P09016 RN7SKP16-201ENST00000410180 299 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 RNA5SP113-201ENST00000410486 84 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.46□□□□□ -1.7
HOXD4P09016 AC013410.2-201ENST00000422627 201 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 AC016712.1-201ENST00000431088 378 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 MTND4LP7-201ENST00000431728 294 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 RPS26P4-201ENST00000431743 355 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXD4P09016 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXD4P09016 OR1H1P-201ENST00000448731 937 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 TCEA1P1-201ENST00000449716 880 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXD4P09016 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.46□□□□□ -1.7
HOXD4P09016 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXD4P09016 AC006967.1-201ENST00000467608 589 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 OR9N1P-201ENST00000491296 333 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXD4P09016 HPRT1P1-201ENST00000509498 657 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.46□□□□□ -1.7
HOXD4P09016 SETP12-201ENST00000514068 805 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 RNU6-319P-201ENST00000516025 108 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXD4P09016 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXD4P09016 C1GALT1P3-201ENST00000522049 819 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 GCSHP4-201ENST00000538792 439 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC4.46□□□□□ -1.7
HOXD4P09016 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXD4P09016 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXD4P09016 AC209154.1-201ENST00000582156 337 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXD4P09016 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXD4P09016 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
HOXD4P09016 AL512782.1-201ENST00000603093 364 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 AL592494.3-201ENST00000609485 464 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 AP000240.1-201ENST00000609910 452 ntBASIC4.46□□□□□ -1.7
HOXD4P09016 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXD4P09016 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXD4P09016 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXD4P09016 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXD4P09016 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
HOXD4P09016 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXD4P09016 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXD4P09016 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 RNA5SP505-201ENST00000364748 108 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 MIR298-201ENST00000401212 88 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 SNORA77-201ENST00000408716 125 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 AC114755.2-201ENST00000413520 361 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 AC009237.10-201ENST00000414112 510 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 AF186996.5-201ENST00000418098 904 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 RPS12P5-201ENST00000423449 371 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXD4P09016 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXD4P09016 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HOXD4P09016 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 AL591363.1-201ENST00000450091 483 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 AC011005.3-201ENST00000491624 395 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 RPL23AP72-201ENST00000492447 435 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.45□□□□□ -1.7
HOXD4P09016 AC008628.1-201ENST00000508663 265 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
HOXD4P09016 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXD4P09016 AC117525.1-201ENST00000515228 503 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXD4P09016 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 OR4R2P-201ENST00000530815 597 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXD4P09016 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXD4P09016 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXD4P09016 AC068790.4-201ENST00000602474 263 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 AC018695.5-201ENST00000605872 315 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 AC024933.1-201ENST00000608472 348 ntBASIC4.45□□□□□ -1.7
HOXD4P09016 AC015922.4-201ENST00000612568 690 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms