Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC110792.2-201ENST00000510278 224 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AC025881.1-201ENST00000518851 512 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AP002453.2-201ENST00000533503 320 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AC006512.2-201ENST00000543250 486 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 OR6C73P-201ENST00000546432 358 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AL845552.1-201ENST00000556820 323 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AL133457.1-201ENST00000564251 987 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AC012065.4-201ENST00000602445 679 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 MIR6085-201ENST00000618314 110 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 MIR6811-201ENST00000620409 58 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AC013488.1-201ENST00000526618 1838 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AKAP17BP-201ENST00000431706 2719 ntBASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC7.1□□□□□ -1.27
TRAIPQ9BWF2 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 GAPDHP24-201ENST00000328713 983 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 Y_RNA.359-201ENST00000365498 102 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 EIF5P1-201ENST00000400019 1231 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 RNA5SP431-201ENST00000410312 120 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 RPSAP65-201ENST00000429660 595 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 USP24P1-201ENST00000433802 779 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 RPL37P21-201ENST00000435890 276 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 COX4I1P2-201ENST00000447446 547 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 RN7SL561P-201ENST00000488553 281 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 PRELID3BP7-201ENST00000503606 469 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AC011853.1-201ENST00000518911 454 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 OR6M2P-201ENST00000529831 871 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AL354718.1-201ENST00000619764 589 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AP001052.1-201ENST00000626421 99 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AL591848.4-201ENST00000567832 3472 ntBASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
TRAIPQ9BWF2 AL356473.1-201ENST00000406203 1408 ntBASIC7.09□□□□□ -1.28
TRAIPQ9BWF2 MTND5P29-201ENST00000458676 1807 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 AP003486.1-201ENST00000525716 3994 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 RNU5F-6P-201ENST00000362979 116 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 OR6C69P-201ENST00000394268 893 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 AC003045.1-201ENST00000398779 713 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 DEFB108C-201ENST00000400154 252 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 AL390316.1-201ENST00000406279 553 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 Y_RNA.599-201ENST00000410489 109 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 RN7SKP56-201ENST00000410513 331 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 AL035422.1-201ENST00000414193 397 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 RPL21P32-201ENST00000419877 477 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 AL022331.1-201ENST00000429025 477 ntBASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC7.08□□□□□ -1.28
TRAIPQ9BWF2 RPL5P10-201ENST00000445207 894 ntBASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms