Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.7
PDLIM3Q53GG5 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 ZNF733P-202ENST00000444809 1573 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC068870.1-201ENST00000563737 2455 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 SNORD56.6-201ENST00000384569 71 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC019050.1-201ENST00000418508 492 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 MTCO3P4-201ENST00000419236 787 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC048351.1-201ENST00000420064 602 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 RPL17P36-201ENST00000420302 549 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC013262.1-201ENST00000426710 252 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AL022331.1-201ENST00000429025 477 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC011242.1-201ENST00000433596 1158 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 PRPF38AP2-201ENST00000438179 851 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AL357520.1-201ENST00000441557 453 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 CYCSP42-201ENST00000450823 238 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 OR52E3P-201ENST00000452083 936 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 HMGB1P4-201ENST00000455362 567 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC091180.1-201ENST00000462104 372 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 EIF1P7-201ENST00000487533 337 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 MTATP6P9-201ENST00000515039 680 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 SCARNA6.1-201ENST00000516989 238 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 NPM1P6-201ENST00000521088 871 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 PDCD5P1-201ENST00000543528 309 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC068446.3-201ENST00000555285 382 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AL049870.4-201ENST00000555741 486 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 MTCYBP13-201ENST00000578634 1093 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 RN7SL290P-201ENST00000578661 300 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 PSMA6P4-201ENST00000603247 718 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC133552.5-201ENST00000604266 540 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC010245.2-201ENST00000606908 1167 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 FAM25E-202ENST00000608562 189 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC104763.3-201ENST00000613765 618 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC136428.4-201ENST00000634254 1155 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC114546.3-201ENST00000623582 1734 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 PANDAR-201ENST00000629595 1506 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC104260.2-201ENST00000623551 3497 ntBASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.45□□□□□ -1.7
PDLIM3Q53GG5 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RNA5SP319-201ENST00000362768 119 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RPS4XP9-201ENST00000405151 780 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms