Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RPL35AP3-201ENST00000414680 288 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 RPS15AP30-201ENST00000420976 390 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 RPS3P2-201ENST00000421346 701 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 AL450263.2-201ENST00000439400 589 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.55□□□□□ -1.36
SOX4Q06945 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.55□□□□□ -1.36
SOX4Q06945 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 PDSS1P2-201ENST00000449397 678 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 ARPC3P2-201ENST00000457786 533 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.55□□□□□ -1.36
SOX4Q06945 RN7SL269P-201ENST00000467795 305 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC6.55□□□□□ -1.36
SOX4Q06945 AC135999.1-201ENST00000478962 479 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 AC097173.1-201ENST00000505862 819 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
SOX4Q06945 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.55□□□□□ -1.36
SOX4Q06945 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.55□□□□□ -1.36
SOX4Q06945 OR5AQ1P-201ENST00000527596 927 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 OR6M2P-201ENST00000529831 871 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.55□□□□□ -1.36
SOX4Q06945 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 AC012146.2-201ENST00000576545 416 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 AC090236.2-201ENST00000587933 1101 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 AC020916.2-201ENST00000591242 360 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 BNIP3P4-201ENST00000604946 565 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 STMN1P1-201ENST00000617809 440 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC6.55□□□□□ -1.36
SOX4Q06945 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.55□□□□□ -1.36
SOX4Q06945 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SOX4Q06945 AC005034.3-201ENST00000604845 1747 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.55□□□□□ -1.36
SOX4Q06945 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SOX4Q06945 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SOX4Q06945 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SOX4Q06945 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.55□□□□□ -1.36
SOX4Q06945 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
SOX4Q06945 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.55□□□□□ -1.36
SOX4Q06945 AC003985.2-201ENST00000562268 1669 ntBASIC6.55□□□□□ -1.36
SOX4Q06945 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC6.54□□□□□ -1.36
SOX4Q06945 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
SOX4Q06945 Z99496.1-201ENST00000469424 1477 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.54□□□□□ -1.36
SOX4Q06945 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 AC114786.1-201ENST00000512892 1415 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 RNU105B-201ENST00000364478 208 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 MTCYBP36-201ENST00000404146 440 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AL096800.1-201ENST00000405326 893 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AP000357.1-201ENST00000409926 1165 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AC013404.1-201ENST00000413068 249 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC6.54□□□□□ -1.36
SOX4Q06945 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC6.54□□□□□ -1.36
SOX4Q06945 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 FMO7P-201ENST00000436045 768 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 RPS26P30-201ENST00000443431 335 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 AC073109.1-201ENST00000445066 978 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AL445466.1-201ENST00000448432 357 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC6.54□□□□□ -1.36
SOX4Q06945 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.54□□□□□ -1.36
SOX4Q06945 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
SOX4Q06945 Y_RNA.701-201ENST00000516812 110 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC6.54□□□□□ -1.36
SOX4Q06945 AP003396.4-201ENST00000527574 265 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.54□□□□□ -1.36
SOX4Q06945 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.54□□□□□ -1.36
SOX4Q06945 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 AC011453.2-201ENST00000603737 729 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AC091193.1-201ENST00000604640 448 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AC005084.1-201ENST00000605160 304 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 AC006840.1-201ENST00000623069 542 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.54□□□□□ -1.36
SOX4Q06945 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms