Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SHMT2P34897 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SHMT2P34897 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
SHMT2P34897 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SHMT2P34897 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
SHMT2P34897 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 RNU1-94P-201ENST00000362627 173 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SHMT2P34897 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SHMT2P34897 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 SNORA68.2-201ENST00000391263 128 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 OR51B3P-201ENST00000412287 913 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 PTP4A1P1-201ENST00000420539 515 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AC004448.2-201ENST00000422360 586 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.52□□□□□ -1.69
SHMT2P34897 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.52□□□□□ -1.69
SHMT2P34897 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.52□□□□□ -1.69
SHMT2P34897 AC104763.1-201ENST00000475274 360 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 RPL12P20-201ENST00000475538 479 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AC098583.1-201ENST00000480875 255 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AGGF1P3-201ENST00000493675 1213 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AC147055.1-201ENST00000509261 750 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.52□□□□□ -1.69
SHMT2P34897 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.52□□□□□ -1.69
SHMT2P34897 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.52□□□□□ -1.69
SHMT2P34897 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.52□□□□□ -1.69
SHMT2P34897 CR383656.6-201ENST00000550518 394 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 RPL21P7-201ENST00000557463 483 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AC105129.1-201ENST00000560250 297 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.52□□□□□ -1.69
SHMT2P34897 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 AC009303.3-201ENST00000591103 736 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.52□□□□□ -1.69
SHMT2P34897 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SHMT2P34897 AC079298.2-201ENST00000623885 459 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AC021106.3-201ENST00000623925 531 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 U3.53-201ENST00000628922 216 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 NEAT1-202ENST00000501122 22743 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 LINC01355-201ENST00000566551 5444 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AC108467.2-201ENST00000617640 1597 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 AC125257.1-201ENST00000560400 2930 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
SHMT2P34897 LINC01109-201ENST00000603837 3081 ntBASIC4.52□□□□□ -1.69
SHMT2P34897 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.51□□□□□ -1.69
SHMT2P34897 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.51□□□□□ -1.69
SHMT2P34897 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SHMT2P34897 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.51□□□□□ -1.69
SHMT2P34897 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.51□□□□□ -1.69
SHMT2P34897 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
SHMT2P34897 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.51□□□□□ -1.69
SHMT2P34897 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SHMT2P34897 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.51□□□□□ -1.69
SHMT2P34897 RNU1-20P-201ENST00000363314 162 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 SNORA70F-201ENST00000384142 135 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 RNU6-729P-201ENST00000384399 107 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 RNA5SP372-201ENST00000390836 115 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 RNA5SP397-201ENST00000391323 118 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 RPS3AP23-201ENST00000401762 784 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 AL080315.1-201ENST00000406055 466 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.51□□□□□ -1.69
SHMT2P34897 RCC2P2-201ENST00000422174 918 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 AC245028.1-201ENST00000423259 256 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.51□□□□□ -1.69
SHMT2P34897 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.51□□□□□ -1.69
SHMT2P34897 AL162591.2-201ENST00000449634 317 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 AC108463.1-201ENST00000450258 347 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 AC239798.3-201ENST00000454459 408 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.51□□□□□ -1.69
SHMT2P34897 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.51□□□□□ -1.69
SHMT2P34897 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.51□□□□□ -1.69
SHMT2P34897 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.51□□□□□ -1.69
SHMT2P34897 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.51□□□□□ -1.69
SHMT2P34897 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.51□□□□□ -1.69
SHMT2P34897 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.51□□□□□ -1.69
SHMT2P34897 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SHMT2P34897 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.51□□□□□ -1.69
SHMT2P34897 AL133338.2-201ENST00000604292 736 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.51□□□□□ -1.69
SHMT2P34897 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
SHMT2P34897 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.51□□□□□ -1.69
SHMT2P34897 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
SHMT2P34897 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SHMT2P34897 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.51□□□□□ -1.69
SHMT2P34897 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SHMT2P34897 AC015813.6-201ENST00000624409 5808 ntBASIC4.5□□□□□ -1.69
SHMT2P34897 AC092435.4-201ENST00000623012 4159 ntBASIC4.5□□□□□ -1.69
SHMT2P34897 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
SHMT2P34897 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.5□□□□□ -1.69
SHMT2P34897 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SHMT2P34897 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.5□□□□□ -1.69
SHMT2P34897 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SHMT2P34897 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms