Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL031666.3-201ENST00000609320 1006 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 AL133383.2-201ENST00000622958 2336 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.43□□□□□ -1.7
COL6A3P12111 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
COL6A3P12111 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 AC011447.7-201ENST00000624228 1590 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 AC096576.1-201ENST00000489014 359 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 AP000542.3-201ENST00000623391 6114 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
COL6A3P12111 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
COL6A3P12111 ARAFP1-201ENST00000422172 605 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 HSPD1P21-201ENST00000436541 245 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
COL6A3P12111 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.43□□□□□ -1.7
COL6A3P12111 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.43□□□□□ -1.7
COL6A3P12111 MIR3922-201ENST00000585192 84 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 MIR7111-201ENST00000619751 72 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.43□□□□□ -1.7
COL6A3P12111 SPATA31D4-201ENST00000419782 4787 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 NAIP-204ENST00000503719 5347 ntTSL 5 BASIC4.42□□□□□ -1.7
COL6A3P12111 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A3P12111 AL591503.2-201ENST00000442314 1005 ntBASIC4.42□□□□□ -1.7
COL6A3P12111 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A3P12111 AC012158.1-204ENST00000483430 465 ntBASIC4.42□□□□□ -1.7
COL6A3P12111 MIR8058-201ENST00000615737 89 ntBASIC4.42□□□□□ -1.7
COL6A3P12111 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 AL034408.1-201ENST00000637712 664 ntBASIC4.42□□□□□ -1.7
COL6A3P12111 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC4.42□□□□□ -1.7
COL6A3P12111 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
COL6A3P12111 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
COL6A3P12111 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 AC074029.4-201ENST00000624796 1859 ntBASIC4.42□□□□□ -1.7
COL6A3P12111 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
COL6A3P12111 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A3P12111 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A3P12111 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A3P12111 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC4.42□□□□□ -1.7
COL6A3P12111 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.42□□□□□ -1.7
COL6A3P12111 AC090181.2-201ENST00000602975 672 ntBASIC4.42□□□□□ -1.7
COL6A3P12111 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.42□□□□□ -1.7
COL6A3P12111 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.42□□□□□ -1.7
COL6A3P12111 AC008013.2-202ENST00000637965 364 ntBASIC4.42□□□□□ -1.7
COL6A3P12111 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A3P12111 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC4.42□□□□□ -1.7
COL6A3P12111 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
COL6A3P12111 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC4.42□□□□□ -1.7
COL6A3P12111 SPATA31D5P-201ENST00000376459 4784 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
COL6A3P12111 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
COL6A3P12111 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
COL6A3P12111 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
COL6A3P12111 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.41□□□□□ -1.7
COL6A3P12111 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.41□□□□□ -1.7
COL6A3P12111 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.41□□□□□ -1.7
COL6A3P12111 AP001357.1-201ENST00000586304 1053 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC4.41□□□□□ -1.7
COL6A3P12111 CSNK1G1-201ENST00000303052 8179 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.41□□□□□ -1.7
COL6A3P12111 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.41□□□□□ -1.7
COL6A3P12111 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.41□□□□□ -1.7
COL6A3P12111 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.41□□□□□ -1.7
COL6A3P12111 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.41□□□□□ -1.7
COL6A3P12111 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 ATE1-AS1-202ENST00000636460 506 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC4.41□□□□□ -1.7
COL6A3P12111 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 DMD-222ENST00000474231 5209 ntTSL 5 BASIC4.41□□□□□ -1.7
COL6A3P12111 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 AL031119.1-201ENST00000404707 1879 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 AC021242.1-201ENST00000507315 2035 ntBASIC4.41□□□□□ -1.7
COL6A3P12111 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A3P12111 MIR449A-201ENST00000362113 91 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms