Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.26□□□□□ -1.41
COL6A1P12109 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.26□□□□□ -1.41
COL6A1P12109 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.26□□□□□ -1.41
COL6A1P12109 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.26□□□□□ -1.41
COL6A1P12109 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 AC006511.3-201ENST00000624929 1783 ntBASIC6.26□□□□□ -1.41
COL6A1P12109 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
COL6A1P12109 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL6A1P12109 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 AL353796.1-201ENST00000561542 3241 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 UBE2Q2P1-202ENST00000354771 883 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 DUTP5-201ENST00000406790 469 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC016397.1-201ENST00000412463 242 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 SETP15-201ENST00000412724 337 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.25□□□□□ -1.41
COL6A1P12109 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 MTCO1P21-201ENST00000416634 589 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AL356320.2-201ENST00000417263 507 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC6.25□□□□□ -1.41
COL6A1P12109 AC068135.1-201ENST00000446164 246 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AL157827.1-201ENST00000447622 132 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 MRPL35P2-201ENST00000448009 511 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC6.25□□□□□ -1.41
COL6A1P12109 RPS27AP8-201ENST00000452665 445 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 RPS29P33-201ENST00000456717 146 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 ENSA-211ENST00000503345 793 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 ST13P12-201ENST00000508958 1094 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 AC138938.1-201ENST00000515431 782 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 AC137768.1-201ENST00000549998 553 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AL049830.4-201ENST00000555149 351 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC021483.2-201ENST00000567415 758 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 MIR4697-201ENST00000582977 78 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC6.25□□□□□ -1.41
COL6A1P12109 MIR132-201ENST00000591554 101 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC6.25□□□□□ -1.41
COL6A1P12109 AL020997.3-201ENST00000602843 359 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 DUXAP11-201ENST00000603858 526 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC124312.4-201ENST00000605533 310 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 AC024257.5-201ENST00000612739 531 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.25□□□□□ -1.41
COL6A1P12109 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.25□□□□□ -1.41
COL6A1P12109 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL6A1P12109 AL049737.1-201ENST00000413920 1403 ntBASIC6.25□□□□□ -1.41
COL6A1P12109 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
COL6A1P12109 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL6A1P12109 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL6A1P12109 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 AL132640.2-201ENST00000559968 1698 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms