Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 ERCC6-202ENST00000374127 1782 ntBASIC1.93□□□□□ -2.1
USH2AO75445 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC1.93□□□□□ -2.1
USH2AO75445 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC1.93□□□□□ -2.1
USH2AO75445 RPL21P11-201ENST00000461458 483 ntBASIC1.93□□□□□ -2.1
USH2AO75445 RN7SL807P-201ENST00000470923 297 ntBASIC1.93□□□□□ -2.1
USH2AO75445 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC1.93□□□□□ -2.1
USH2AO75445 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC1.93□□□□□ -2.1
USH2AO75445 MTND1P6-201ENST00000523621 946 ntBASIC1.93□□□□□ -2.1
USH2AO75445 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 RPL21P7-201ENST00000557463 483 ntBASIC1.93□□□□□ -2.1
USH2AO75445 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC1.93□□□□□ -2.1
USH2AO75445 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 LPP-208ENST00000448637 5835 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 MAPK10-372ENST00000641954 3413 ntBASIC1.93□□□□□ -2.1
USH2AO75445 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC1.93□□□□□ -2.1
USH2AO75445 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC1.93□□□□□ -2.1
USH2AO75445 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC1.93□□□□□ -2.1
USH2AO75445 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 RNU1-14P-201ENST00000362759 152 ntBASIC1.93□□□□□ -2.1
USH2AO75445 SNORD3H-201ENST00000384486 214 ntBASIC1.93□□□□□ -2.1
USH2AO75445 AC007066.1-201ENST00000392902 381 ntBASIC1.93□□□□□ -2.1
USH2AO75445 RNU6ATAC10P-201ENST00000408635 111 ntBASIC1.93□□□□□ -2.1
USH2AO75445 AL157831.1-201ENST00000426134 473 ntBASIC1.93□□□□□ -2.1
USH2AO75445 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC1.93□□□□□ -2.1
USH2AO75445 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC1.93□□□□□ -2.1
USH2AO75445 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.93□□□□□ -2.1
USH2AO75445 RNA5SP49-201ENST00000516450 115 ntBASIC1.93□□□□□ -2.1
USH2AO75445 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC1.93□□□□□ -2.1
USH2AO75445 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC1.93□□□□□ -2.1
USH2AO75445 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 MIR7112-201ENST00000616126 65 ntBASIC1.93□□□□□ -2.1
USH2AO75445 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
USH2AO75445 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 CAST-202ENST00000325674 3356 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 CPEB3-202ENST00000412050 7664 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 MIR331-201ENST00000362302 94 ntBASIC1.93□□□□□ -2.1
USH2AO75445 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 HMGB1P18-201ENST00000438801 619 ntBASIC1.93□□□□□ -2.1
USH2AO75445 PTMAP3-201ENST00000447474 330 ntBASIC1.93□□□□□ -2.1
USH2AO75445 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC1.93□□□□□ -2.1
USH2AO75445 AC104763.1-201ENST00000475274 360 ntBASIC1.93□□□□□ -2.1
USH2AO75445 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 EEF1A1P25-201ENST00000495704 1267 ntBASIC1.93□□□□□ -2.1
USH2AO75445 RPL12P22-201ENST00000519073 490 ntBASIC1.93□□□□□ -2.1
USH2AO75445 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC1.93□□□□□ -2.1
USH2AO75445 AL162574.1-201ENST00000615702 950 ntBASIC1.93□□□□□ -2.1
USH2AO75445 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC1.93□□□□□ -2.1
USH2AO75445 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USH2AO75445 CCDC144A-206ENST00000399273 8686 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC1.92□□□□□ -2.1
USH2AO75445 MTR-202ENST00000366577 10529 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC1.92□□□□□ -2.1
USH2AO75445 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 GREB1L-209ENST00000580732 8749 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC1.92□□□□□ -2.1
USH2AO75445 RNA5SP374-201ENST00000362939 125 ntBASIC1.92□□□□□ -2.1
USH2AO75445 SNORA70J-201ENST00000384182 135 ntBASIC1.92□□□□□ -2.1
USH2AO75445 RNA5SP241-201ENST00000391326 114 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AL356968.2-201ENST00000412769 1257 ntBASIC1.92□□□□□ -2.1
USH2AO75445 TRIM60P17-201ENST00000415181 719 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AL590609.2-201ENST00000421430 368 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AC017083.1-201ENST00000428093 483 ntBASIC1.92□□□□□ -2.1
USH2AO75445 SRIP2-201ENST00000428470 166 ntBASIC1.92□□□□□ -2.1
USH2AO75445 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC1.92□□□□□ -2.1
USH2AO75445 AC037198.2-201ENST00000478845 733 ntBASIC1.92□□□□□ -2.1
USH2AO75445 AP000563.1-201ENST00000490865 758 ntBASIC1.92□□□□□ -2.1
USH2AO75445 ATP1B1P1-201ENST00000509767 915 ntBASIC1.92□□□□□ -2.1
USH2AO75445 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
USH2AO75445 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms