Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 HLA-A-209ENST00000638375 975 ntBASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX9Q9Y5X1 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 AL355355.2-201ENST00000442321 338 ntBASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.85■□□□□ 0.93
SNX9Q9Y5X1 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SNX9Q9Y5X1 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 AP003071.4-201ENST00000562276 1284 ntBASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SNX9Q9Y5X1 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SNX9Q9Y5X1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
SNX9Q9Y5X1 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.83■□□□□ 0.92
SNX9Q9Y5X1 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SNX9Q9Y5X1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
SNX9Q9Y5X1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 AC125437.2-201ENST00000625180 2167 ntBASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 NUDT16P1-203ENST00000513809 620 ntBASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX9Q9Y5X1 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 LINC01465-201ENST00000408887 1940 ntBASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 AC004980.1-204ENST00000429707 299 ntBASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SNX9Q9Y5X1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms