Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 DUSP5P1-201ENST00000441325 1139 ntBASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 AC116407.4-201ENST00000623319 1061 ntBASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 KRT8P8-201ENST00000434750 1448 ntBASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHGA1Q9Y5H4 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 TMEM179-206ENST00000616017 1645 ntBASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 FP700111.2-201ENST00000619190 1892 ntBASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 AP000523.1-201ENST00000398242 1049 ntBASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 AC005332.1-201ENST00000577698 1310 ntBASIC18.72■□□□□ 0.59
PCDHGA1Q9Y5H4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 AC007375.3-201ENST00000600936 2314 ntBASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.71■□□□□ 0.59
PCDHGA1Q9Y5H4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.71■□□□□ 0.58
PCDHGA1Q9Y5H4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 AL359075.1-203ENST00000462729 1002 ntBASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 PRSS44-201ENST00000515154 1146 ntBASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 AL441883.1-201ENST00000566170 1045 ntBASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 AC069148.1-201ENST00000608741 768 ntBASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 AC093458.2-201ENST00000623150 629 ntBASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDHGA1Q9Y5H4 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 AC026396.1-201ENST00000419388 421 ntBASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 HCG4P8-203ENST00000443049 980 ntBASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 AL136038.3-201ENST00000561909 1096 ntBASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 AL160286.2-201ENST00000567150 934 ntBASIC18.69■□□□□ 0.58
PCDHGA1Q9Y5H4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms