Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 KRT17P3-201ENST00000420566 1262 ntBASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 RNA5SP413-201ENST00000516373 109 ntBASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS9D1Q9Y2B5 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS9D1Q9Y2B5 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS9D1Q9Y2B5 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS9D1Q9Y2B5 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS9D1Q9Y2B5 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS9D1Q9Y2B5 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 ZNF815P-204ENST00000434898 1737 ntBASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS9D1Q9Y2B5 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS9D1Q9Y2B5 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 AC026366.1-201ENST00000488803 879 ntBASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 AL032819.2-201ENST00000624543 2162 ntBASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS9D1Q9Y2B5 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 KRT18P6-201ENST00000555540 1265 ntBASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 AC008403.3-201ENST00000598924 454 ntBASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
VPS9D1Q9Y2B5 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms