Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 AC010653.2-201ENST00000623505 997 ntBASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 AC018553.1-201ENST00000616682 1458 ntBASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.3■□□□□ 0.84
LIMD1Q9UGP4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 AL049796.1-201ENST00000565336 1766 ntBASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 AL450487.1-201ENST00000426799 995 ntBASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 AC096733.2-201ENST00000609937 1394 ntBASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 AF106564.1-201ENST00000607058 2553 ntBASIC20.29■□□□□ 0.84
LIMD1Q9UGP4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 AC073130.3-201ENST00000624389 2278 ntBASIC20.28■□□□□ 0.84
LIMD1Q9UGP4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 AC140113.3-201ENST00000605663 199 ntBASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 HLA-A-209ENST00000638375 975 ntBASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 AL031432.5-201ENST00000641059 760 ntBASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LIMD1Q9UGP4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LIMD1Q9UGP4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.27■□□□□ 0.83
LIMD1Q9UGP4 AC092338.2-201ENST00000568827 1415 ntBASIC20.27■□□□□ 0.83
LIMD1Q9UGP4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms