Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.78■□□□□ 0.44
DDX28Q9NUL7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 PGM5P4-201ENST00000421970 445 ntBASIC17.77■□□□□ 0.44
DDX28Q9NUL7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
DDX28Q9NUL7 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
DDX28Q9NUL7 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
DDX28Q9NUL7 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.77■□□□□ 0.43
DDX28Q9NUL7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
DDX28Q9NUL7 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 AC087633.2-202ENST00000565166 1439 ntBASIC17.76■□□□□ 0.43
DDX28Q9NUL7 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 AC016769.1-201ENST00000409132 1010 ntBASIC17.76■□□□□ 0.43
DDX28Q9NUL7 AC006015.1-201ENST00000429970 570 ntBASIC17.76■□□□□ 0.43
DDX28Q9NUL7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
DDX28Q9NUL7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 AL049812.1-201ENST00000432563 2267 ntBASIC17.75■□□□□ 0.43
DDX28Q9NUL7 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
DDX28Q9NUL7 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
DDX28Q9NUL7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms