Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC007225.1-201ENST00000566331 1836 ntBASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 AC004980.1-204ENST00000429707 299 ntBASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 AC011506.1-201ENST00000474329 610 ntBASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 C2orf69P3-201ENST00000565542 1120 ntBASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 AP005242.2-201ENST00000580065 1175 ntBASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 DGCR10-201ENST00000609839 495 ntBASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TM9SF3Q9HD45 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 AC131212.4-201ENST00000623606 975 ntBASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TM9SF3Q9HD45 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 AC007952.6-201ENST00000573168 2673 ntBASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 AC003957.1-201ENST00000625108 2673 ntBASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 AC010203.1-204ENST00000548782 407 ntBASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 AC092720.2-201ENST00000602388 1665 ntBASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
TM9SF3Q9HD45 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 AC104076.2-201ENST00000448912 469 ntBASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 DUX4L26-201ENST00000489078 1255 ntBASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 AC097488.1-201ENST00000507834 756 ntBASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 EGLN1P1-201ENST00000531623 762 ntBASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TM9SF3Q9HD45 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 CRYGFP-201ENST00000418459 633 ntBASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TM9SF3Q9HD45 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms