Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC005082.1-201ENST00000413042 2259 ntBASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 AC016405.3-201ENST00000607710 860 ntBASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 KRT8P17-201ENST00000453110 1448 ntBASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 AL162412.1-201ENST00000567129 965 ntBASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHMP1AQ9HD42 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 MCRIP2P1-201ENST00000394346 511 ntBASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 AC016769.1-201ENST00000409132 1010 ntBASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 AC007322.4-201ENST00000509611 723 ntBASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 GAS2L1P2-201ENST00000436355 1356 ntBASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.71■□□□□ 0.27
CHMP1AQ9HD42 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
CHMP1AQ9HD42 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 STX7-201ENST00000367937 1090 ntTSL 5 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 GXYLT1P2-201ENST00000433312 1230 ntBASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHMP1AQ9HD42 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms