Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
TRIM39Q9HCM9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 AC073195.1-201ENST00000607241 877 ntBASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRIM39Q9HCM9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRIM39Q9HCM9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 NIFKP9-201ENST00000419265 221 ntBASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 KSR1P1-201ENST00000446298 240 ntBASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 AC113410.3-201ENST00000623366 203 ntBASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRIM39Q9HCM9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 AL596275.1-201ENST00000423464 877 ntBASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.27■□□□□ 0.68
TRIM39Q9HCM9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM39Q9HCM9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM39Q9HCM9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.27■□□□□ 0.67
TRIM39Q9HCM9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRIM39Q9HCM9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM39Q9HCM9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms