Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 AC096733.2-201ENST00000609937 1394 ntBASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PAAF1Q9BRP4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PAAF1Q9BRP4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 KRT8P41-201ENST00000533985 1514 ntBASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 FAM87A-204ENST00000613235 858 ntBASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
PAAF1Q9BRP4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 KRT18P35-201ENST00000510488 1269 ntBASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PAAF1Q9BRP4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 AC104076.2-201ENST00000448912 469 ntBASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 AL049597.2-201ENST00000565575 961 ntBASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PAAF1Q9BRP4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
PAAF1Q9BRP4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
PAAF1Q9BRP4 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PAAF1Q9BRP4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PAAF1Q9BRP4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PAAF1Q9BRP4 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms