Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 AC004951.3-201ENST00000418645 1148 ntBASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 SLC25A1P4-201ENST00000567977 778 ntBASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 AL162377.1-201ENST00000618844 1793 ntBASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 LINC01238-205ENST00000567549 1107 ntBASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 AP005242.2-201ENST00000580065 1175 ntBASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 AIRN-201ENST00000601203 4374 ntBASIC19.53■□□□□ 0.72
HDDC3Q8N4P3 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 AC008040.2-201ENST00000461049 708 ntBASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 AP000692.2-201ENST00000608391 879 ntBASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 AC092667.1-201ENST00000434301 2586 ntBASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HDDC3Q8N4P3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
HDDC3Q8N4P3 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 WWOX-216ENST00000569818 525 ntBASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HDDC3Q8N4P3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HDDC3Q8N4P3 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms