Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 FEM1AP1-201ENST00000431297 1995 ntBASIC24.61■■□□□ 1.53
RC3H1Q5TC82 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 KRT8P11-201ENST00000409686 1436 ntBASIC24.61■■□□□ 1.53
RC3H1Q5TC82 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC24.61■■□□□ 1.53
RC3H1Q5TC82 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 CNP-204ENST00000472031 1019 ntTSL 2 BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
RC3H1Q5TC82 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 LINC01311-201ENST00000565162 1445 ntBASIC24.59■■□□□ 1.53
RC3H1Q5TC82 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
RC3H1Q5TC82 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 AL691432.3-201ENST00000621860 400 ntBASIC24.58■■□□□ 1.53
RC3H1Q5TC82 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC24.58■■□□□ 1.53
RC3H1Q5TC82 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC24.58■■□□□ 1.52
RC3H1Q5TC82 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
RC3H1Q5TC82 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 SPDYE13P-201ENST00000445314 798 ntBASIC24.57■■□□□ 1.52
RC3H1Q5TC82 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
RC3H1Q5TC82 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 NPAP1P7-201ENST00000613027 823 ntBASIC24.56■■□□□ 1.52
RC3H1Q5TC82 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
RC3H1Q5TC82 MOK-225ENST00000522867 1883 ntTSL 5 BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
RC3H1Q5TC82 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms