Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 ATP5G2P1-201ENST00000433580 426 ntBASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 AL023803.3-201ENST00000615559 522 ntBASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 AC007375.3-201ENST00000600936 2314 ntBASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 AP000347.1-202ENST00000435868 847 ntBASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC88AQ3V6T2 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 SLC25A1P2-201ENST00000430693 912 ntBASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 SDHD-206ENST00000528182 754 ntTSL 3 BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 KLK8-205ENST00000593490 267 ntTSL 3 BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC88AQ3V6T2 KRT8P45-201ENST00000414328 1447 ntBASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 CLDN5-201ENST00000403084 2357 ntBASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 AC116351.2-201ENST00000606540 1585 ntBASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 STARP1-201ENST00000397973 869 ntBASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 Z85996.1-201ENST00000494644 937 ntBASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 GLRB-205ENST00000512619 728 ntTSL 3 BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 AL353719.1-201ENST00000566847 864 ntBASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
CCDC88AQ3V6T2 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC88AQ3V6T2 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
CCDC88AQ3V6T2 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 AC092338.2-201ENST00000568827 1415 ntBASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
CCDC88AQ3V6T2 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 CA15P1-201ENST00000481698 905 ntBASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 DFFB-212ENST00000625756 649 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 AP005212.1-201ENST00000581547 1997 ntBASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CCDC88AQ3V6T2 SPDYE13P-201ENST00000445314 798 ntBASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 AC008040.2-201ENST00000461049 708 ntBASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 SNX5-210ENST00000481323 562 ntTSL 3 BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 PRSS44-201ENST00000515154 1146 ntBASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 AC073314.1-201ENST00000568729 2216 ntBASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 MOK-225ENST00000522867 1883 ntTSL 5 BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
CCDC88AQ3V6T2 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC23.87■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms