Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 AP002469.2-201ENST00000531724 424 ntBASIC20.71■□□□□ 0.91
CHD9Q3L8U1 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 AC092329.2-201ENST00000598402 547 ntBASIC20.71■□□□□ 0.91
CHD9Q3L8U1 IFNL4P1-201ENST00000607083 540 ntBASIC20.71■□□□□ 0.91
CHD9Q3L8U1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHD9Q3L8U1 BX119927.1-201ENST00000636596 1552 ntBASIC20.7■□□□□ 0.9
CHD9Q3L8U1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 DPP3P2-201ENST00000416030 1696 ntBASIC20.7■□□□□ 0.9
CHD9Q3L8U1 FP700111.2-201ENST00000619190 1892 ntBASIC20.7■□□□□ 0.9
CHD9Q3L8U1 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
CHD9Q3L8U1 AC016734.2-201ENST00000624325 1377 ntBASIC20.7■□□□□ 0.9
CHD9Q3L8U1 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 AL645929.1-201ENST00000420084 975 ntBASIC20.69■□□□□ 0.9
CHD9Q3L8U1 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.69■□□□□ 0.9
CHD9Q3L8U1 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.69■□□□□ 0.9
CHD9Q3L8U1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.68■□□□□ 0.9
CHD9Q3L8U1 SMG8-203ENST00000578922 2178 ntBASIC20.68■□□□□ 0.9
CHD9Q3L8U1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
CHD9Q3L8U1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHD9Q3L8U1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms